RNA id: TU89216


Basic Information

Item Value
RNA id TU89216
length 521
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC122350053
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2030824 ~ 2035980 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTAGTTTTAGTCAAAGACACAGAAACTGTAAGAGAATCAACATATAATCGCTCCGTTCAGAGATAGACACATAAACACGATCAATGGCGAAAACATCACTGAACGTACGACAAGCGGACATGAGTGATGAGCTGCAGCGGGAGGTTCTCGAGTGCGCTCTTCTGGCCGTGAACATGCACGATGATAACTGGAGCATTGCTGTGTACATCAAGGAGGAATTCGACAGAAGGCACCAGCCCAACTGGCACTGCGTTGTTGGAGACAGTTACAGTTGCTATACGACATATAATTCGAACTACTTTATCTCTTTTGATGTGGGCAATAGACATATAACTCTTTACAAGTCTGACTGAGCAACAGTTCGAAGGCATTTGATCGAGGTGCTGGAGTGCAGTGCATTCAGatcaAGGCCTCGTCTCGTGTCGTCGCACGGAAAATGAGATGCTGATTTCGCATGACGAGTGTAAAACTGCAATAAATCGGGtcacaatgcaataaaaaaagctcTTAATAAATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251573.1 lncRNA upstream 3550 2024562 ~ 2027328 (+) True LOC122350140
TU89214 lncRNA upstream 3620 2024812 ~ 2027258 (+) False LOC122350140
TU89213 lncRNA upstream 10844 2018397 ~ 2020034 (+) False polb
TU89197 lncRNA upstream 27875 2000761 ~ 2003003 (+) True G60288
TU89188 lncRNA upstream 31410 1967120 ~ 1999468 (+) False G60281
TU89180 lncRNA downstream 8439 2041502 ~ 2113333 (+) True G60279
TU89181 lncRNA downstream 8439 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA downstream 8439 2041502 ~ 2044650 (+) False G60279
TU89184 lncRNA downstream 8439 2041502 ~ 2044650 (+) False G60279
TU89185 lncRNA downstream 8439 2041502 ~ 2042464 (+) False G60279
XM_043246854.1 mRNA upstream 10844 2014859 ~ 2020034 (+) True polb
XM_043246853.1 mRNA upstream 16194 2006084 ~ 2014684 (+) True enkd1
XM_043246852.1 mRNA upstream 16194 2008598 ~ 2014684 (+) False enkd1
XM_043247683.1 mRNA upstream 35019 1966583 ~ 1995859 (+) False ikbkb
XM_043247684.1 mRNA upstream 35019 1967657 ~ 1995859 (+) True ikbkb
XM_043247450.1 mRNA downstream 4636 2037699 ~ 2039825 (+) True LOC122350758
XM_043247567.1 mRNA downstream 22268 2055331 ~ 2058725 (+) False mrpl40
XM_043247566.1 mRNA downstream 22269 2055332 ~ 2058725 (+) True mrpl40
XM_043247582.1 mRNA downstream 28478 2061541 ~ 2069288 (+) True gle1
XM_043247302.1 mRNA downstream 36755 2069818 ~ 2071669 (+) True si:ch211-51h9.7
TU89212 other upstream 13358 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 112507 1915460 ~ 1918371 (+) True G60259
XR_006251599.1 other upstream 1178874 842077 ~ 852004 (+) True znf608
TU88420 other upstream 1226039 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1490812 537794 ~ 540066 (+) False cdc14b
TU89217 other downstream 829 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 4689 2037752 ~ 2039836 (+) False LOC122350758
TU89939 other downstream 1815551 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1891798 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 2015556 4048619 ~ 4073897 (+) False ccdc120a

Expression Profile