RNA id: XM_043247450.1


Basic Information

Item Value
RNA id XM_043247450.1
length 663
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC122350758
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2037699 ~ 2039836 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTAAGCGAGAGGGGGAGGAGCCAACGGCGGTCGCACACCTACATTGCTTTTGGTCAAGCACACAGCGGGAGCATCTCAGGCGCTGCGAGCGAGTCGCGTTTCTCTCCGTCTCAACAAATCTGCACAGAAATAAGATCCAGCATGTCGGACAGAAAGGCAGTCATCAAAAATGCGGACATGTCTGAGGAGATGCAGCAGGACGCTGTGGAGTGTGCAACACAGGCGCTCGAGAAGTACAACATCGAGAAGGACATCGCCGCCTACATCAAGAAGGAGTTCGACAAAAAGTACAATCCCACCTGGCACTGCATCGTGGGGAGGAACTTCGGCAGTTACGTGACTCACGAGACCAAACATTTCATCTACTTCTACCTGGGTCAGGTGGCCATCCTGCTCTTCAAATCGGGCTGAgcgacggcacccatccatTTCAACAGACCATTACGAACTGACTGTACTGACAAGGCGAACCATTCCTGCACTGGGACCTGCCTTCCTTCTCTCGGCTGCTTCTCCTTTCGTTCTGATTATTGTTTAGAAAAAGCCCGTGTGAGAGGAAAATGCCATAAAGAAacacttgtatttatttttgttttctatacaCGGTTTGAGCGTTTTATGTCACCcgcgtttttttttattaaagcaaaatggTTTGGC

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG:

id description
K10418 DYNLL; dynein light chain LC8-type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251573.1 lncRNA upstream 10371 2024562 ~ 2027328 (+) True LOC122350140
TU89214 lncRNA upstream 10441 2024812 ~ 2027258 (+) False LOC122350140
TU89213 lncRNA upstream 17665 2018397 ~ 2020034 (+) False polb
TU89197 lncRNA upstream 34696 2000761 ~ 2003003 (+) True G60288
TU89187 lncRNA upstream 38231 1979786 ~ 1999468 (+) True G60281
TU89180 lncRNA downstream 1677 2041502 ~ 2113333 (+) True G60279
TU89181 lncRNA downstream 1677 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA downstream 1677 2041502 ~ 2044650 (+) False G60279
TU89184 lncRNA downstream 1677 2041502 ~ 2044650 (+) False G60279
TU89185 lncRNA downstream 1677 2041502 ~ 2042464 (+) False G60279
XM_043246237.1 mRNA upstream 3327 2030824 ~ 2034372 (+) False LOC122350053
XM_043246854.1 mRNA upstream 17665 2014859 ~ 2020034 (+) True polb
XM_043246853.1 mRNA upstream 23015 2006084 ~ 2014684 (+) True enkd1
XM_043246852.1 mRNA upstream 23015 2008598 ~ 2014684 (+) False enkd1
XM_043247683.1 mRNA upstream 41840 1966583 ~ 1995859 (+) False ikbkb
XM_043247567.1 mRNA downstream 15506 2055331 ~ 2058725 (+) False mrpl40
XM_043247566.1 mRNA downstream 15507 2055332 ~ 2058725 (+) True mrpl40
XM_043247582.1 mRNA downstream 21716 2061541 ~ 2069288 (+) True gle1
XM_043247302.1 mRNA downstream 29993 2069818 ~ 2071669 (+) True si:ch211-51h9.7
XM_043246917.1 mRNA downstream 56334 2096159 ~ 2103906 (+) True naif1
TU89217 other upstream 1719 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 4636 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 20179 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 119328 1915460 ~ 1918371 (+) True G60259
XR_006251599.1 other upstream 1185695 842077 ~ 852004 (+) True znf608
TU89939 other downstream 1808789 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1885036 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 2008794 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 3064745 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 3064745 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile