RNA id: TU89289


Basic Information

Item Value
RNA id TU89289
length 3081
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G60347
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2520830 ~ 2524134 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cccggtgacagcttttgtacctttttttttttttttttttctgagagtgtagtaatttttttttaaatggcaataatTTGTCGATAGCATGCATATAACTTGGTTAAGTTTTGCTCCTGTAGTACCTCTCCTGCGGACCAGATCAGTCTTGTTCACATGGATCAGATGAATCGTGATGTACCGGGTCTGGATTGAGAGTTTTCACATGGTTTACATTCATTTGTGATCAGACTCCAGAGACGCTTACGAACCAGACTACACGACAGACGAGCGCGCGACATGGAGATCGTTCTAAAAAAGTTGATTCATCATTCAAAagttatacatttacaaatatatcgattcctttttttttttttcatttcaaacctgtctttgtatgtgtatatatatatatatatatatatatatatatatatatatatatataaaaaacaaaacaaaaaaaaaacgaatcgCTCTTTGGGTTTTTCCAAACCAAAAACTCTGCGAGAAAGAAGACGGCTGCATAGCTTTGCTCAAAATCTGCCCGACTTTCGCTGACTGAACCCccgcaaacacacacgcgcacacacacacacacacacacacacacacacacacacactcacacacacacacatactcacacgcacacacacacacacacacacacacacacacacgcgcacacacacactcacgcgcaCACCCCGAACAcaggacagaaaacacagctCACGATCAGGACACAATCGCTCTCGTAGGCTGGAGGAAGTACACACTAGAAATGACCTGGGCTGTGTTCAAAATAACATGCTAGCCTACTACAGAACTAAAAGTTAAAGGATCTGAGGTACTAACATTTACCTTTTAAGGGTAAATAAAGGTGTTTTTCCTCTCACTGTGAcaattttttacctttttttctgagtgtATTCATACTACGCCTgcagtgtctttttttgtacAGCTACTACAGTAGCCAGAATGTGCATTACAGCTATACACTACTCACTGGACCGAatactgtatcccacaatgcaatgcacttgACTTGACCTTCCCTTTACAGTGTGACAAACGAACTGGTCGAAAAAAGAAGTCGAATGCAGCAGTACGTTCTGCATGCAGCGTGGCGATAGTCGTCCTTTAGAAAGCAGCTGATTTTATTCTGAACACAGCCGCGGTTTCAGTGCGTCTCTGAGGACTGAGATTTTCTAACGGTGAGTGTCGCCTGTCTCTGATTTCTACTGTTCGTACGCgtgtaaacctttttttttcgaTGCGCTCTATAAGTTACAGCTCTGCTCTTCGGTTCATTGACTGCCTGGCGTTCACCGTCAAGGACGTTTTCTCCAGAAATGTGCTAAAAAACAAGCAGGTATGTTTGATAAAACAGCCACGACGCATTTATGCTGCTAATTTCCTGTTGCGTTGTCATTTGTATATGTTGCGcgcttttatgcattttttttttttttaatctaagcAGCTGCTGAAagttcattttatataatatctgttaattacattcattatttgatttattcattagtttttttatctataaaatGCCTTTGTGAATGAACCCAAGAGCAGAGCGACTAGCTGTTTCTGGTTTTAAAGTGGCAGCGTTCAGATCTATAATTCAGGCCCAAACGGACCGATTCATGACATTCGCGTTACGCTGCGATATTCTCGTATTTCATCCCCAAAACCGGCCCAGAAGACGGGCCTGAAGCTCGACGGCGACGCTGAAGCTTTGTCCTGAAACCGCCTGAAGTCCAGTTGGTCCTGAGTTGAGTCTCTAGCGAATGCCGTGATTTGTGCCTCCGTGAATCTCTGGCAGTGAGGTGAGGAGAAGCTTTCCGAGGCACTCGCGGGGGAAACGGACCTCTGATAGGACTGGAGAATTCTGGGAACCCTGTTGAACAGACCCTTTGCGTTCTGCTCCTAAAGCTTTCTGAGGGACGATTGTGGGTACAGATAAAGTGCAAAACGGCTCAAAGCCATCAGAGAACTCGCTTTACCGGTGCGGTGGTTCTCAACCCGTTGGCCGCAGACAACATAAAACCTAGGTAGCCTTTATTAAGGTATTCAAAGTCTACTGTATGTTTTCAGAAACTCAACCTAACTGTAAAATTgcaaccaaaattaaaatgcattataaaatttgAAGGTTCGTGCGTTgcttttgtaatgcattaagGTGTAAAAACAATAGATGAGTATTATAATGCATCGTGAAATCATACAGTGCATAATGCCTTGTAGCTACCTTAATATTGCATTagcaaaatatttcagtttaaatttcatatttttgcttaaattgCATATAATTTCCATCTTTCCGGATTGCACCGTTTTAAAGAAGTAATACACTTAATGCGATGCATAAATGATCACAGCAGGTTCATAATTTTGGATTTGGATTATACTGATTAAAGCAAGCgaataaactaaatgtaaaaaaatatttcttcccTAAAGCAGCATAGCATGTAtgtgattttacttaatattatattttttaggatgcatttatttaaaaattagtttAGGTTCAAAAAATATTGGAACAagttatatttaattagttaaaatattaaaccaaatttgatttactaataataaatgtataaacccGGTTGCAGAAATCTTAtctgtttaatttatgtttgATATATATGCAGCACGTTAAGTTTGTTAAAAGGATGGAGGCTTTATGTGCAATTCAAATACATCAATCCAATTTTGATCTGATTAATTCGTGCATTTCAGTGTTTGATTTGAAAGATGTTGCGCTACTttgcaataaatcattttggttTTTGATGAGCACAGCCGGTTGAGGACCACCGATGCGGTGATTTAGACTTTCTTTGTCGTTTGTTGTACCCTTCTCTCACGTCTCTTCCTCCATGTCTTCAGATAGTCTCAGTTCTTCTTGAAGAATGAAAAGAGGCGCTTGTCTCCGTCCGAGAGGCGGTGCGCTCGTCTGGACGGAGCTCCTCCTCGTGACCCGTTGAAGGAGTACGGAGGATCCTTCCACTCGTCCTGGTGTTTATCCATCAGCTGTTGATCGATAACTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89255 lncRNA upstream 98613 2408095 ~ 2422217 (+) True G60342
TU89248 lncRNA upstream 176661 2343936 ~ 2344169 (+) True G60335
TU89239 lncRNA upstream 316520 2192957 ~ 2204310 (+) True G60328
TU89233 lncRNA upstream 355588 2163307 ~ 2165242 (+) True G60323
TU89206 lncRNA upstream 358786 2159314 ~ 2162044 (+) True G60297
XR_006251673.1 lncRNA downstream 33086 2557030 ~ 2559048 (+) True LOC122351006
XR_006251674.1 lncRNA downstream 33086 2557030 ~ 2559048 (+) False LOC122351006
TU89315 lncRNA downstream 86373 2610317 ~ 2612227 (+) True G60361
TU89328 lncRNA downstream 108773 2632717 ~ 2634015 (+) False G60369
TU89329 lncRNA downstream 109201 2633145 ~ 2634015 (+) True G60369
XM_043247312.1 mRNA upstream 1948 2510789 ~ 2518882 (+) True rab35b
XM_043246386.1 mRNA upstream 12716 2465043 ~ 2508114 (+) True gcn1
XM_043245997.1 mRNA upstream 56448 2449510 ~ 2464382 (+) False pxnb
XM_043247512.1 mRNA downstream 36409 2560353 ~ 2609576 (+) True LOC122350791
XM_043247509.1 mRNA downstream 36409 2560353 ~ 2609576 (+) False LOC122350791
XM_043247513.1 mRNA downstream 36409 2560353 ~ 2609576 (+) False LOC122350791
XM_043247506.1 mRNA downstream 36409 2560353 ~ 2608977 (+) False LOC122350791
XM_043247508.1 mRNA downstream 36410 2560354 ~ 2609576 (+) False LOC122350791
TU89218 other upstream 480994 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 484850 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 487767 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 503310 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 602459 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 1324670 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1400917 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1524675 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2580626 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2580626 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile