RNA id: TU89472


Basic Information

Item Value
RNA id TU89472
length 1390
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G60473
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1991335 ~ 1994745 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTTTTGTTTCTGGCAAATGTCACTTTCGCAGAGTTTCAAAATTCAGTGACGACTCTACAAATGCGAGTGAAATAGTTACGTTTCTCAAAGGAATTACCTGCAAGCTGGTCTCTGTTTCCTGAATGGCGTTCTGCACTAAACTCTGCATGCGGTTCTCAAACATCTTGCTCTGCTCAATCACAAGCTGAGACTCgtctctgaacacacacacacacacacacacacacacacacacaggagagagAGACTCATGATGGAAACATGCAAATGAACGCAAAGCGTCTGATGCGCTGAAGCTGGACTCACGGCTGCGGTGCGTCCGACGGTCTGTGGGACATGAGCGGGTGTGCAGGGGCCGGTGGAGTTCGTCCTCCATCTGGACTGCCGCTCACTGGACTACGAACCTTACTCTGAAACACACGCGCGCTAAAGTCAAGCACACGGCACATTCCTTCAGCAGAAGGTGCAGCAGTTGTTTCTCGCTGCGGGCCATCGCACTCACCATCCCCTCCACACGCGGCAGCAGCTCCAGAACTCTCTGACGGCACACCATCGTCTtactgcgcacacacacacatacacacacacacacacatgcatgtttttaaacttttgaaataattatacTGATCACTGAACtggtcattaaaataaaaggatgCTTGACAGGAAAACACAGTCTACTTCAGGTTTTCGGTCATCTGATCTTGgtttagactttttttaaatcaggttACAGCTATTTTAgtgtatattttagtatttataacTGTCCTAATGTCCATCTTCAGCTTGTGCTTCACGTGCTTTTTTTTGCTCTGAAATATATTTCCTGATTATTATAAAGTAAACGTAagaactttaatatttttaaaagatgaacACTTACTGGACCGAAGCAGCTTAGGATcgctttattattaaaaaaaaacttaaaaaattatattaaaagattgatatttataacattttatgtctGTATCtgtgaaactaaactaaaaacttGTGTGAAGGaggtacattttcaaaataataatgttacatttatttaatatataagacTTTTATGGTCCACATAGCATTATACTGTTTTGTATTATGCTTTTATGGCTCACATAATGTGATACAGTGAAgccaaaataagcaaaaatatgcaatttggtgcaaatgctgatatttatatgggtaaaaatgtaattcagttaTGATGGTGATGTGAATCAATGAGATCTTCATAACAGCGTCGCAGATACTgacataaaatgttacaaaaatccatcatttaatgtttttttctaaacaaaagGTACTTAAGATTATGctcatttctatttaatttctgtatttgtatctattattatttttcttgatGAGTGTAGGGCTGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89469 lncRNA downstream 2782 1987773 ~ 1988553 (-) True G60471
TU89115 lncRNA downstream 141402 1849488 ~ 1849933 (-) True G60237
TU89073 lncRNA downstream 210982 1726225 ~ 1780353 (-) True G60204
TU89101 lncRNA downstream 225792 1717401 ~ 1765543 (-) True LOC122349999
TU89490 lncRNA upstream 42955 2037700 ~ 2039825 (-) True G60487
TU89547 lncRNA upstream 129313 2124058 ~ 2124341 (-) True G60510
TU89530 lncRNA upstream 136624 2131369 ~ 2156393 (-) False LOC122351111
TU89537 lncRNA upstream 136641 2131386 ~ 2135058 (-) False LOC122351111
TU89523 lncRNA upstream 137545 2132290 ~ 2134865 (-) False LOC122351111
XM_043247054.1 mRNA downstream 26282 1947141 ~ 1965053 (-) False plat
XM_043247053.1 mRNA downstream 26282 1947141 ~ 1965053 (-) False plat
XM_043247056.1 mRNA downstream 29131 1947141 ~ 1962204 (-) True plat
XM_043247048.1 mRNA downstream 54463 1927729 ~ 1936872 (-) True si:dkeyp-117b11.1
XM_043246946.1 mRNA downstream 64613 1880738 ~ 1926722 (-) True cltcl1
XM_043246847.1 mRNA upstream 1805 1996550 ~ 2008100 (-) False vdac3
XM_043246848.1 mRNA upstream 1805 1996550 ~ 2008098 (-) False vdac3
XM_043246849.1 mRNA upstream 1805 1996550 ~ 2008089 (-) True vdac3
XM_043246850.1 mRNA upstream 1805 1996550 ~ 2008087 (-) False vdac3
XM_043247449.1 mRNA upstream 46809 2041554 ~ 2044605 (-) True rpl6
TU89063 other downstream 204282 1732864 ~ 1787053 (-) False pi4kab
TU89104 other downstream 235951 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 237419 1749147 ~ 1753916 (-) True LOC122349998
TU89107 other downstream 239967 1749147 ~ 1751368 (-) False LOC122349998
TU89094 other downstream 386222 1601521 ~ 1605113 (-) False LOC122350657
TU89498 other upstream 64649 2059394 ~ 2061335 (-) False c8h22orf39
TU89500 other upstream 64649 2059394 ~ 2061481 (-) True c8h22orf39
TU89626 other upstream 466186 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 529071 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 799389 2794134 ~ 2813107 (-) False rad9b

Expression Profile