RNA id: XM_043247583.1



Basic Information


Item Value
RNA id XM_043247583.1
length 964
RNA type mRNA
GC content 0.47
exon number 3
gene id c8h22orf39
representative False

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2059394 ~ 2061481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TAGAAcgtaaaatatcatttaaaaatatattatatatttgtattgataTAGTGCTTTATCAGAAATGGCCAGTAGATGGCGGTTTAGAGCGAAAACATTGATCGCGACGCGCTGGAAAACACCAGAGAAGAAGAGCGCGCGCGCAGTATGGCGGGGTCACACTCAAGCTGGAGGCCACCGCGTTCGTGCGACGTCTACTGGTGTGAATTCAAGCACTGCAAGAGTTTGTTTAACAGGTTCCATGAATACTACACCTACGGAAGAGCGCCGGACTGCCAGCAGTGGAAAGAGGACTATCGCACCTGCAAAGAGTGGGAGAAAAACCCCAGCACACACGCCAAGGAAGCCCTCCGGGAGAGCGAAAGGAAGCGGCTCGCCGAGCAGAGGAAGTTCACTCCGGTCTGGGAGCTTCGACAGACGCCTCCGGCTGACTGGCACCTGCCGCTGAACCAGGGCAAAGACTCGAAGTCGTAAAGGGACGCCGGAAAGCACTCGAGCTGCGTGAACGTCTGCTGGGAACCTTCTCACACTACCTCTCCGTCCGGTTCTAGATCGGATTCTCCCGGGCGCTCGGCTTCAAAACGGTCAACCTGAATATGTAACCGGTAGAGTGGACTTTGGAGCATAAGCGTCGGATGACCCTTGTGGAAAATCACTATGATTAAAAAtgagatgcatttatttcacgCCGAGTGTACCGCACACACGTTAACgggcttaaataaaaaaaataactgcgATTGTACTTTTGTAATACTAAACTGGTATGCGTAAAGTCTGCTGAGCTAGAACtaattttgtgctttaattGTGCAACTAAAGACGTGTGGAATACAGCTGGTGGTGTTAAAGTGGAACTATTGCAAGTACGCCTTAAATATCTGTCAGTGTTGGCATTAAAacgcattttaaatttaatattaagaaattgcATCGTGCACTCCAAATAAAGTGGAAGAAAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89490 lncRNA downstream 19762 2037700 ~ 2039825 (-) True G60487
TU89472 lncRNA downstream 64842 1991335 ~ 1994745 (-) True G60473
TU89471 lncRNA downstream 66489 1991335 ~ 1993098 (-) False G60473
TU89469 lncRNA downstream 71034 1987773 ~ 1988553 (-) True G60471
TU89115 lncRNA downstream 209654 1849488 ~ 1849933 (-) True G60237
TU89547 lncRNA upstream 62592 2124058 ~ 2124341 (-) True G60510
TU89530 lncRNA upstream 69903 2131369 ~ 2156393 (-) False LOC122351111
TU89537 lncRNA upstream 69920 2131386 ~ 2135058 (-) False LOC122351111
TU89523 lncRNA upstream 70824 2132290 ~ 2134865 (-) False LOC122351111
TU89524 lncRNA upstream 70824 2132290 ~ 2134865 (-) False LOC122351111
XM_043247564.1 mRNA downstream 4404 2046116 ~ 2055183 (-) True acaa2
XM_043247449.1 mRNA downstream 14982 2041554 ~ 2044605 (-) True rpl6
XM_043246847.1 mRNA downstream 51487 1996550 ~ 2008100 (-) False vdac3
XM_043247301.1 mRNA upstream 10423 2071889 ~ 2075596 (-) True seta
XM_043246169.1 mRNA upstream 14681 2076147 ~ 2081503 (-) True zdhhc12a
XM_043246916.1 mRNA upstream 20575 2082041 ~ 2089293 (-) True slc25a25a
XM_043247584.1 mRNA upstream 73742 2135208 ~ 2138080 (-) True LOC122350843
XM_043247988.1 mRNA upstream 92769 2154235 ~ 2162003 (-) False LOC122351111
TU89063 other downstream 272534 1732864 ~ 1787053 (-) False pi4kab
TU89104 other downstream 304203 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 305671 1749147 ~ 1753916 (-) True LOC122349998
TU89107 other downstream 308219 1749147 ~ 1751368 (-) False LOC122349998
TU89094 other downstream 454474 1601521 ~ 1605113 (-) False LOC122350657
TU89626 other upstream 399465 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 462350 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 732668 2794134 ~ 2813107 (-) False rad9b
TU89795 other upstream 971001 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 1783987 3845453 ~ 3850590 (-) False lhfpl4b

Expression Profile