RNA id: TU89630



Basic Information


Item Value
RNA id TU89630
length 776
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G60566
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2506238 ~ 2574004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCGTTTATTAAATCAAGGctttcattttctatttattcgTACAACCATTATTAGTGGACGCAGCGCTGATCGGAGAAATCAGCGTCACATCCTTTGGGTTGTCAATGGCTCgcgtctctctctcacacacacacacacacaccgagaaATCAATTACAACGGCCAGAAACCGCTCGCCATCCGAACGAAATATAAAAGGGCATCCGAACGACAATGTTTGAAAAGAATTGGCACAAATTAATACTTCATCTTTCAGAAGAAAACCAAACGGAAAAAaaaaaaaatctatacattttacatacatttagataatttacagaaaaaaaggagCCTGACCTGCATGCCGTCTTCTCCCTGGCGCAGCCGCAGCAGGCTGACGAGTGTGTGCTCGCTCTGAGCTCGGACGCTGGTGTTCTTGTCCTTGGTGTTGTCCAGCAGGGCTTTGATGACCGGTTTGACCAGAGCGGGCTCCAGAGCGGGAGTCTCGGCCTCCTTACACACCCACCACAGCACGCGCTCCGTCACCAGACGGATGTCACTCGACTGGTTCTGCAGACACTGGGAGACGCACAGACAGATCACCGGGGAGAGTGACGCGATATTAACTACAGTTAAGCAAAAGTATTTTTCaatgctttgtaaaattatgcCAGAAACATTTCCTTTACAATAGTAATGTAACtcttaaagtaataataaaaacgtgaCACTGATTTACTATTATTAGTGCCATCAAacaattagaatttaaattgcatctaaaatatatatatttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU89604 lncRNA downstream 90737 2410413 ~ 2415501 (-) True G60548
TU89581 lncRNA downstream 167394 2338559 ~ 2338844 (-) True G60542
TU89570 lncRNA downstream 223347 2282538 ~ 2282891 (-) True G60532
TU89568 lncRNA downstream 253148 2249342 ~ 2253090 (-) True G60530
TU89557 lncRNA downstream 337991 2166932 ~ 2168247 (-) True G60519
TU89685 lncRNA upstream 93610 2601709 ~ 2612229 (-) False G60604
TU89684 lncRNA upstream 98725 2606824 ~ 2612229 (-) True G60604
TU89687 lncRNA upstream 100354 2608453 ~ 2609694 (-) False G60604
TU89695 lncRNA upstream 274521 2782620 ~ 2807499 (-) False rad9b
TU89694 lncRNA upstream 296205 2804304 ~ 2813178 (-) False rad9b
XM_043247552.1 mRNA downstream 84065 2420331 ~ 2422173 (-) True LOC122350818
XM_043247555.1 mRNA downstream 86524 2404210 ~ 2419714 (-) False LOC122350819
XM_043247551.1 mRNA downstream 96205 2408346 ~ 2410033 (-) True LOC122350817
XM_043247554.1 mRNA downstream 99781 2404210 ~ 2406457 (-) False LOC122350819
XM_043247553.1 mRNA downstream 99799 2404210 ~ 2406439 (-) True LOC122350819
XM_043247862.1 mRNA upstream 13115 2521214 ~ 2552187 (-) False bicdl1
XM_043247860.1 mRNA upstream 13115 2521214 ~ 2552187 (-) False bicdl1
XM_043247861.1 mRNA upstream 13115 2521214 ~ 2552187 (-) False bicdl1
XM_043247859.1 mRNA upstream 13115 2521214 ~ 2552187 (-) True bicdl1
XM_043247520.1 mRNA upstream 104746 2612845 ~ 2645929 (-) False mtmr3
TU89626 other downstream 41867 2460931 ~ 2464371 (-) True G60564
TU89500 other downstream 444757 2059394 ~ 2061481 (-) True c8h22orf39
TU89498 other downstream 444903 2059394 ~ 2061335 (-) False c8h22orf39
TU89104 other downstream 750854 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 752322 1749147 ~ 1753916 (-) True LOC122349998
XR_006251678.1 other upstream 15717 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 286035 2794134 ~ 2813107 (-) False rad9b
TU89795 other upstream 524368 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 1337354 3845453 ~ 3850590 (-) False lhfpl4b
TU90264 other upstream 1580625 4088724 ~ 4092157 (-) True G60967

Expression Profile