RNA id: TU89684


Basic Information

Item Value
RNA id TU89684
length 3700
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G60604
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2601709 ~ 2612229 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTGTGGCTCATACTTTAATAGTGTTTAATATAGCTTGATTTCTttatacaaaaaagaaagttCAAGGTAAGCAGCCTTGTTAGTTGAAAAACATCGATCATCAATATTAAGGTAGTAGTACACGACGGGACGTCCCAAAACCAAGTCAGAAGTTACTCATGCGTTTGATATGATCACTCAGGCGTTTGCTTACAATGGACCCACGAACTGAAACAAAAAGCCTGTTTTCATTACTCCGACAGAAGATCTTCCACAAACCCTGAGGGCTACCGGACACTGTTTCACGTCACAGCCGAACAGGACGTCCGTTAACGGAAAAAGCAGCAGAAGAGCCCCGCGGAACCGAGAGTGTCGTTTCCGACAGAAAAATACGATAAGTTCACTTGAACATCACAAGGACACTTGTAGCGAGAACATGGCGTGTCTCTTTAAAAAGATTTACAAGCTCGGACTCTATaggcataaaaatatacaatgtgCGGTAGGTTCGATAATAGAGCTTAAAAAACCGGACGAACTGTCATCAAGAGCAGCCATATTGACCGTTTACCACGTTAGCATACGACGCGCGTCATGGACATAAAACCAGGTCTGTACTCTTCTGTAGGAAACCCATTTCAGCTGTCTATACAAACAGTTTAATAGCATAAAAAATAGACTTCGTAGCTTCGTCAGTCGAGTTCCCGTTTAGCTATAAAAATTGAAAGAACCGTATGTACAGTGTGCTAATCACGTGGTTTAATTGAAGGGATATTCTGGGTTCAGAGTGAACGTGCAGCATGTGCtaaaccaaaaatacatttttaatgctagaTAAAATTGCTTGGTAACCTTTTTGGTGAATTGATCCGATTTTACAGGGATACTGCAGCGACCATTTTTACTTAAAGAAAGTAGTGGATGACACTTTATAGGTCAAATatctatttctttaaaagaagaaTTTGCGTTTATGCAattacaaaatggCCAATGTATTATAATCTACTGAAGCTAGTAGATggtgtataaaaaaagaaaaaggatgtTCTTTACCCTAGAAATGTgtctaaaggaaaaaaaattatgtgaaatGTCTTGCTATAAAACACTTATAAAAGGGCCTGTTCCTTTTTACCtccagtaaaaatgtattactgttatCACAATTTGTACATAAAATCAAAAAGGGGAGAATCAGAAGGATTTTCTGCAGTAATGGCCGTCATGCCACCAAACGCTGTTGAGAGCTTAGCTTACTGAACCCAGGATATTCCCTCAAAGTctttccccccaaaaaactgcatttgtttttctttacattggACCTTCATGAATGGTTACAGCATGGACAGAGTTTACAACATCAGCACAATGTCCCAGACTCTGGGGCTGCGAGTGAATAACATGGCTCTGTTCACGGTTACAGGCATGAGATGATATAGTTCAGAGTTTTACGAAGCGCCTGTTAAAAGGGCAAGTCCATCCACGCGGGAGGTGGACGATGGCTCTTACGTCATCCTTCCGGGACGCTCTCAGACTGAAGACTGGTCCCAAACCTACACCACCACCAGGATAAAGAGGTCACTTCAACACTTCCCTGTCTGACGCAGATCAGCTCAGAAACATCATTACTGCTGCAAAGGATGCCGATTTTTTTTGAGGCCATAACTAGAAGGAATTTAACTACAAAGCAGCGGATGTTCATGCATTTGAGCATGCATGAACATCGTCAAACCTGATCGTCTGTATCCCTAGAAGGATACACAGTTTACGTGGCAGTGTCTCATGCGTACCTTGTTGACGGGAGTCAGCTGGGTGCGAACAGAGCTAGTGTGAAGGCGCCAGCGCTCCCGGTCTCTCTCGCTGCCGCTGCTCTCGAAGCGCCCGGGCGATCTCTCCCTGCGGCTGTCTAGCACAGCCCGACCGGGCGATTTCTCGCGCTCCAGAGGCCGAGCCGGAGATTTGTCCCTCCGGAACTCCGTGCGGCCCTCGCGGTAGCGGTGAGGGGTGCTGGGCTCGCGGTGCAGCTGCCCCTCCTGGGCCCCGGGCCCCGAGGCCAGGCGCTTGGAAATGTGCTCGTTGTAGGTGGGCGGCCCGCGCTTGTTTGGGCTGCTGTGAAGATTTGGGTAAATGCATGATGCTTTGACTGCACACAAGATGATTTATACGGTTTGtgaacatgaaatattgatgaaGCAATAAGCAACTCAAGGCCAGGCGCGTGATTTTACCACGAGTGAAGAGAACTCCTTCAAACGTGCCAAGATCACTAACGGTAGGAGCAGTATGATAACAAtagaagtaaaaatataaaaaaggtcattgcaaCTTTTTTCGAAATTTCTTTCCTAGAATTAGGAGTTTGCATCTTGCAATTCGGACTTTTTCCTCCCAGTTCTAAAGCTGTTTACACTGCTCAGATCCGAGCTTTTGGCCCACCTCTTATCACAACTGGTATTCGATATCTGTTTGCATTAATTCTCACCCAGAATGATCGTCAGTGACGGCTTTACTGTGCACATGATAGACCCTCGGGCTCTGAATGGCCGTGCCCGAATggtgattttaatttttcattgtttcatttcTCTATGGCTCACAATAGAATTCTTTAGAAAAGTAGAAGAGGCGCGAGTGAGCAGCCTGTAGTGCCTTTAACAGCAGTGTTATGACGGTAGTGGTGAGAAGTGTAATGAAGGTTTGAGCGGCAAAGCGTTTGTTTTTATAAGATGACGAGGCAGGTGTTGAAAACCAGCCGCTAATACTAATGCTCTATTTCTTACATGTAAAGTTCCCGCCTCAAAAAAACATTCGCTGTCTTTATGATAGAATAAGTGCGTTTAGATGCTGGATCTTCAGATATTGGATGTGTATAAGAACCTCATTTGAAAGTGGCCCAGATCGGATGTGAAAAAATCAGATCTCGTGcagatttttgtgtttacatgtgtgCAACAAATTCTGATGAGTGTCAgaggtgaggaaaaaaaaaatctgatttcttTGTGCCAGTGTAAACACAGCTTAACTGTtcatctcgcaattctgactttttcttgaAATCTCGCaaattgtattgttttctcAGAATTCTACGTTTTCATCTTGCAATTCAAATCATGACTTTAGGCCTACATCTTACAAATCctttttctcaaaattgtgaGTTAGCATCTCAAACTTCTGACTGCTTTTCCTTCATCTCAGAATTCAGTTCATATTTGGCAAGTCTGACTTTTTTCCGAACTTCAATTCTGAAGTTTACACCTcacaataatttcttttttcttagaATTGGAAGTTTGCGTatcataatttagaatttaCACACAGCAATTGTGACTTATTTCACGGAACTGCAAAATGCAAAGTCACAACTTAAGCTTACGATTCTGAGAACATTTCAGAATTGTATATAAAAGTTGCCTTTcgactttttttatatttttattccttgGCATAAAAAGGTTTCCACAGATAGCAGACATCAAGTGATTACATTTTCCGTTTCCTGGGATtcgaaacagaacagaaaaaaaactttttgcagaacataaaagaaaatttgtTGCTAAAATGATTGTGAATGTTACTAGCTATTAGCACCGTTACTTTGTTCCCAAAGCGCGTAGTAGatttattaactaaaactaaaatattaaaaataaaagatatatatatatatatttaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89632 lncRNA downstream 32820 2507469 ~ 2574004 (-) False G60566
TU89630 lncRNA downstream 98725 2506238 ~ 2508099 (-) True G60566
TU89604 lncRNA downstream 191323 2410413 ~ 2415501 (-) True G60548
TU89581 lncRNA downstream 267980 2338559 ~ 2338844 (-) True G60542
TU89570 lncRNA downstream 323933 2282538 ~ 2282891 (-) True G60532
TU89695 lncRNA upstream 170391 2782620 ~ 2807499 (-) False rad9b
TU89694 lncRNA upstream 192075 2804304 ~ 2813178 (-) False rad9b
TU89696 lncRNA upstream 192075 2804304 ~ 2807499 (-) False rad9b
TU89697 lncRNA upstream 192075 2804304 ~ 2807499 (-) False rad9b
TU89699 lncRNA upstream 192075 2804304 ~ 2813107 (-) False rad9b
XM_043247862.1 mRNA downstream 54637 2521214 ~ 2552187 (-) False bicdl1
XM_043247860.1 mRNA downstream 54637 2521214 ~ 2552187 (-) False bicdl1
XM_043247861.1 mRNA downstream 54637 2521214 ~ 2552187 (-) False bicdl1
XM_043247859.1 mRNA downstream 54637 2521214 ~ 2552187 (-) True bicdl1
XM_043247552.1 mRNA downstream 184651 2420331 ~ 2422173 (-) True LOC122350818
XM_043247520.1 mRNA upstream 616 2612845 ~ 2645929 (-) False mtmr3
XM_043247518.1 mRNA upstream 616 2612845 ~ 2645929 (-) False mtmr3
XM_043247519.1 mRNA upstream 616 2612845 ~ 2645929 (-) False mtmr3
XM_043247521.1 mRNA upstream 616 2612845 ~ 2645929 (-) False mtmr3
XM_043247515.1 mRNA upstream 616 2612845 ~ 2645929 (-) False mtmr3
XR_006251678.1 other downstream 54638 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 142453 2460931 ~ 2464371 (-) True G60564
TU89500 other downstream 545343 2059394 ~ 2061481 (-) True c8h22orf39
TU89498 other downstream 545489 2059394 ~ 2061335 (-) False c8h22orf39
TU89107 other downstream 855456 1749147 ~ 1751368 (-) False LOC122349998
TU89698 other upstream 181905 2794134 ~ 2813107 (-) False rad9b
TU89795 other upstream 420238 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 1233224 3845453 ~ 3850590 (-) False lhfpl4b
TU90264 other upstream 1476495 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 1688763 4300992 ~ 4307499 (-) True G61023

Expression Profile