RNA id: TU89775


Basic Information

Item Value
RNA id TU89775
length 1471
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G60661
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3056299 ~ 3057846 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attcattaatatttgttatttaatatatgatgtCATATAGATTtattgcatttgtgtgtatatgtgttaaGTAtatatgcacgcacacacacaaatatatatacatttaaaaaacatttacgtACAGTGGCTcctgcatttttgcattttgcattcacacactttttttttcttttgctaatTGAATCCCGTGAATACCTTTCCGCAGactccttttatttttatactgagCAGACAATATTTTCTATCCCCTAACCAAACCCTAAACCTTCCCCCTACAGAAAACACACTTGAACTTGCTATACTCACAGATAAAAaccatttactatttttaatatctttttccTTGTGTGCACCGCAGGCTGGtccccaaaatgtaaaaaaaaaatgtgttttactgtCCTTGTGAGGATGCCACAATGCAGCATATACAACCATAAACCCACAAAGATAATTTCACAAAAGGTTTCACTTttgcaattaaatgcaattatgatACCGAAAACCCTGCAACGTGCAAAAAGTCACCACAACTGATTTGATAAATGTCTTTGCATGACAAGGTCGCTTTAAAAACGACTCCAAATGTATTTTGGGGACATACTGCGCAGCTACGGTCCTGTTCTATCCAGGCAGTACACTAAAACATGACCGGCAAGCACTGGGCATCAAGTTCAATCAGAGCTGAAGCATAAAGATCGCTGAGGCACATCAGAAAAACACAGTGATTCTTATCGTGCTAAATCAATTCTGACACGCCATCATGAGCCCAAACGTCGTTTCAGGACACCGCCATCGACTGCGGGCCGCATGCTTCCCTCCTGTTCAGACACGCAGAGCACACAAACGTTCAATTTCACATCACCGCAATCCAAAGAATCGGATTTAAAGCCGTGGCATTGACATTTTAACCCCGTCGTGATGGCGTGGAGGACACGCACTCTTCTCCGAGAGCATGATGGGAATGGCGAGGGGTTTATTAAGATCTCAGCTGCCTCGTTCTCTGTAATTAAGGATGGGATAATTGTCATGAAAGTCCTATTCTGTAGCGGTTCGTCTGCTGATGAGTAGCTATGGAGAGAAAAGAGTCGGAACGAGGCATTGTCGCAAAGACTGCTGCAAACTTCAATATCTACAGACGAAACGCCGTGAATCAAGACTTAACTTCACAATTAAGTTCAAGAGGCTTCGCGCTCGTACCTCAATGACTGTATTTTACCAAAACAAGAATACACGTCCACACATAAAAAGGGAGAAGCAGCCATTAGTTAAGAACGATTATTTATAGTCGCAAGGTGAGTAACGCGTTCGAGCAGGGATGGCTTCAGAAGAAGGCTGCAGGCAATCACACCGACTTCCAGACGGCGACGGCGAATCAGAAGAACGCGTACCGCAATGTGagttttgtttcattataatgcattcacaacacatttaaaaccataaaaatgtttctggGTAACACTTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89774 lncRNA upstream 280 3055427 ~ 3056019 (+) True G60660
XR_006251539.1 lncRNA upstream 55317 2998907 ~ 3000982 (+) True LOC122349907
TU89440 lncRNA upstream 102305 2953016 ~ 2953994 (+) True G60452
TU89328 lncRNA upstream 422284 2632717 ~ 2634015 (+) False G60369
TU89329 lncRNA upstream 422284 2633145 ~ 2634015 (+) True G60369
TU89782 lncRNA downstream 19030 3076876 ~ 3080723 (+) True G60668
TU89788 lncRNA downstream 27910 3085756 ~ 3086373 (+) True G60673
TU89844 lncRNA downstream 511648 3569494 ~ 3570284 (+) True G60718
TU89854 lncRNA downstream 521656 3579502 ~ 3579982 (+) True G60728
XR_006251656.1 lncRNA downstream 549469 3607315 ~ 3607977 (+) True LOC122350949
XM_043247559.1 mRNA upstream 22400 3015349 ~ 3033899 (+) True adra1aa
XM_043246714.1 mRNA upstream 103615 2948990 ~ 2952684 (+) True gatd3l
XM_043246712.1 mRNA upstream 108950 2943281 ~ 2947349 (+) True LOC122350330
XM_043246713.1 mRNA upstream 109335 2943282 ~ 2946964 (+) False LOC122350330
XM_043246715.1 mRNA upstream 113094 2939263 ~ 2943205 (+) True tmem127
XM_043247953.1 mRNA downstream 439578 3497424 ~ 3525944 (+) True lrrtm4l2
XM_043247952.1 mRNA downstream 439578 3497424 ~ 3525944 (+) False lrrtm4l2
XM_043247890.1 mRNA downstream 497752 3555598 ~ 3568917 (+) True vsig8b
XM_043247345.1 mRNA downstream 517685 3575531 ~ 3576550 (+) True LOC122350663
XM_043247089.1 mRNA downstream 590156 3648002 ~ 3652067 (+) True nefmb
TU89218 other upstream 1016463 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1020319 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1023236 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 1038779 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1137928 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 790768 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 867015 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 990773 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2046724 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2046724 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile