RNA id: TU90051



Basic Information


Item Value
RNA id TU90051
length 450
lncRNA type read_through
GC content 0.33
exon number 2
gene id G60858
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3831486 ~ 3852802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aaaaaaaaaacctaacaggcaCAGTACACTTAACAgtaaaaaactaacaaacatttCAGTGCATTTACGGAGGACTAATTCTTAAAACCTGCAAAGCAGCCTAAGCTTGCTGAGCACAGAGGCTATAAAGTGGACCAATTCTaactgcaaggacagtctggcgcttctgactcacaatcTTTGCGTaagttacattttcatattaaaaggACCTGCTTCTTACTATTCAAATGTGAGTTTTGAGCAGAGTACATCAGtgattattgtttgttttgcacagaaataataaaatacaatatgtgtaaatgtatgtgttttttaagcttaaactgcctaaacacattgcattacaccaaaaactcaaaatagtgttctttttagcaacatcacatgaccgcttaaaaaaaaaaaaaagtacagtaatatAACATTGTAAATACTGACTTGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90035 lncRNA downstream 66403 3762453 ~ 3765083 (-) True G60850
TU90015 lncRNA downstream 97291 3733335 ~ 3734195 (-) True G60839
TU89998 lncRNA downstream 125180 3704732 ~ 3706306 (-) True G60830
TU89985 lncRNA downstream 127032 3645219 ~ 3704454 (-) True G60819
TU89990 lncRNA downstream 149720 3677250 ~ 3681766 (-) True G60822
TU90212 lncRNA upstream 117642 3970444 ~ 3996691 (-) True G60932
XR_006251682.1 lncRNA upstream 146035 3998837 ~ 3999610 (-) True LOC122351087
TU90228 lncRNA upstream 146173 3998975 ~ 3999574 (-) False LOC122351087
TU90233 lncRNA upstream 148817 4001619 ~ 4006782 (-) False zgc:113363
TU90222 lncRNA upstream 168081 4020883 ~ 4024734 (-) True G60937
XM_043246376.1 mRNA downstream 31312 3769300 ~ 3800174 (-) False grip2a
XM_043246375.1 mRNA downstream 31312 3769301 ~ 3800174 (-) False grip2a
XM_043246374.1 mRNA downstream 31312 3769301 ~ 3800174 (-) True grip2a
XM_043246372.1 mRNA downstream 31316 3766554 ~ 3800170 (-) False grip2a
XM_043246371.1 mRNA downstream 31317 3766554 ~ 3800169 (-) False grip2a
XM_043247561.1 mRNA upstream 14678 3867480 ~ 3873578 (-) True gata1b
XM_043246240.1 mRNA upstream 22919 3875721 ~ 3879595 (-) True cdk20
XM_043247001.1 mRNA upstream 27485 3880287 ~ 3898517 (-) False hcfc1b
XM_043247000.1 mRNA upstream 27485 3880287 ~ 3898516 (-) True hcfc1b
XM_043247002.1 mRNA upstream 46565 3899367 ~ 3908886 (-) True irak1
TU89795 other downstream 796394 3032467 ~ 3035092 (-) True G60679
TU89698 other downstream 1018379 2794134 ~ 2813107 (-) False rad9b
XR_006251678.1 other downstream 1279300 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 1367115 2460931 ~ 2464371 (-) True G60564
TU89500 other downstream 1770005 2059394 ~ 2061481 (-) True c8h22orf39
TU90264 other upstream 235922 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 448190 4300992 ~ 4307499 (-) True G61023
TU90417 other upstream 540411 4393213 ~ 4397074 (-) True G61071
TU90966 other upstream 1334513 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 1343809 5196611 ~ 5197889 (-) False LOC122349940

Expression Profile