RNA id: TU90212


Basic Information

Item Value
RNA id TU90212
length 1446
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G60932
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3970444 ~ 3996691 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaactaaaaaaaaactaaaaaaacgaacaaaactATATTGAATAGTACAAAATTATATCTGCATAACTGTTGCTTGTTTCAACGTTGTAaagaaaatacatgaataaacatCCACAAGCACCGTGGACATACTGAAATACAGAATAAACCACAAACACGTTCCCTTTGCTCAAGTCTGACCGGACAGTAGACATCTACAGGTTATTATCAAGAACATAGTCGTGAGATGAATGTAAACGCCGTCTAGTCCTCTCTAGTCTCCTGCAGTATACAGTTACAGAGacaattgtactttttttttttttatgaatctgtAGACAGTTTAGCTCTTAACAGCATTTTCTCAGGCAGAACCCGCACGACAACCtccaaaacacacaagaaaTGTCCaatcaaagaaatatatacagaaGTACTTATAATGTAGCCGTAAGAAGCCACAGAGCAGGTGATTCCCTATAGTCATGTGATGCTTAGCGCTGATCATGCACTCACAAGGGCAGCTGAACACAACTGTAGACCGAACGCGACGATACAGGGATCACACCGACGTTGCATAGAtccaaaaacttaatttttccTGAAAACGCTCGTTATGTTATTGCATTCGACTAAAACGTACTGCCTTTGCTCACAACTTGCCGAAACAATTTTTACACTTGTCACACTTTCCCAGTCAAACACGACCAGCCTTAAAAGCTTATATTGTTATCACAtgtatcttttttcttttgttgcatttcttttttgaaCCGATCACAGGCCTCACCGATCGAGACGTATCCACCTCAAAATTACGCACAAATCACGCTTTCGATTGATATCCACCGAAATCAACGAGGCCggacaaataaactaaaaacattaaacctgCAGccactgaaagaaaacaagttgcCAAGAAAATCGAATCCAATATTTTTCGAGCGGTTCTTAAAAGGCAGGTCGTTTTTGACCGAAACACTAAATTAGTTCAAAAACGTCCGCGTGAAGCTTTAACGCCTGTATCACAATAAAACTGATTTCTCTAGAAGGTATTTTCTACACATGGTTTAGAAAAGTTACCAGCCGTCTACTAGAACCATCCATCGCTGTGGATATTAAtctcattcttttttattttttcagtaaacagcagtgaaaatatatagtttcatcttaaatacacaatataacttGATATATGTGGTAAAAACTAAACTCTTTTTTCCGAATGTACGTTAGCCATCAGCTTATAATATCTAATACagttcacaaaaacacataaatgagCTGTAATGTTGCATAACCAATAGTTTCAAAGCTGCTATTGCTAATGTACACAATAAAACTACTAATTTTCTTCagatctgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaaaaaataaaaaaaaaaaaaaaatat

Function

GO:

id name namespace
GO:0071702 organic substance transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90051 lncRNA downstream 117642 3831486 ~ 3852802 (-) True G60858
TU90035 lncRNA downstream 205361 3762453 ~ 3765083 (-) True G60850
TU90015 lncRNA downstream 236249 3733335 ~ 3734195 (-) True G60839
TU89998 lncRNA downstream 264138 3704732 ~ 3706306 (-) True G60830
TU89985 lncRNA downstream 265990 3645219 ~ 3704454 (-) True G60819
XR_006251682.1 lncRNA upstream 2146 3998837 ~ 3999610 (-) True LOC122351087
TU90228 lncRNA upstream 2284 3998975 ~ 3999574 (-) False LOC122351087
TU90233 lncRNA upstream 4928 4001619 ~ 4006782 (-) False zgc:113363
TU90222 lncRNA upstream 24192 4020883 ~ 4024734 (-) True G60937
TU90260 lncRNA upstream 66214 4062905 ~ 4063653 (-) True G60963
XM_043247004.1 mRNA downstream 48493 3909433 ~ 3921951 (-) False mecp2
XM_043247003.1 mRNA downstream 48493 3909433 ~ 3921951 (-) True mecp2
XM_043247002.1 mRNA downstream 61558 3899367 ~ 3908886 (-) True irak1
XM_043247001.1 mRNA downstream 71927 3880287 ~ 3898517 (-) False hcfc1b
XM_043247000.1 mRNA downstream 71928 3880287 ~ 3898516 (-) True hcfc1b
XM_043247986.1 mRNA upstream 3640 4000331 ~ 4006806 (-) True zgc:113363
XM_043247987.1 mRNA upstream 3640 4000331 ~ 4006805 (-) False zgc:113363
XM_043245987.1 mRNA upstream 185656 4182347 ~ 4184911 (-) True tsr2
XM_043245984.1 mRNA upstream 188562 4185253 ~ 4215379 (-) False cdk16
XM_043245982.1 mRNA upstream 188562 4185253 ~ 4215377 (-) True cdk16
XR_006251616.1 other downstream 119854 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 935352 3032467 ~ 3035092 (-) True G60679
TU89698 other downstream 1157337 2794134 ~ 2813107 (-) False rad9b
XR_006251678.1 other downstream 1418258 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 1506073 2460931 ~ 2464371 (-) True G60564
TU90264 other upstream 92033 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 304301 4300992 ~ 4307499 (-) True G61023
TU90417 other upstream 396522 4393213 ~ 4397074 (-) True G61071
TU90966 other upstream 1190624 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 1199920 5196611 ~ 5197889 (-) False LOC122349940

Expression Profile