RNA id: TU90407


Basic Information

Item Value
RNA id TU90407
length 487
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G61067
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4388176 ~ 4389182 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTGCACAGGGTGATGGGGGTTTGGATAGTGCGAGGGCCGCTCCGGCCGGGAAGGGGGGCTTAGCCGGTGTGTCCGAATGCGAAGGATCAGGAATCTCTGGAGAAGGGGCGGAGCTGCGCTGCCGCGGGGATCGGGCGCTCCATTCTTCCAAACCACTGGAGGCCGCAGCCGTGGCGGAGCTGCACGTAGCACTGGCCTTGCGAGGCTGAGGGAGCTGTCGTGCCTGTTTCTCCTGATCTCGAAGCCACTGTAAGTACGATTCTCTGGCCACTTGCTCCTCTATGGCCTCGTTGGTGGCTTCCCAATCCGTGGCCCTCTTCTTGTCCTCCAGCATCTGTTGTTCTATCCAGGATTCCTCTGACGTTTTAATGGCATTCTTCATGAGTGACTGGTCTGCAAactgcagagagacagagacagatacaGAAGAAGGGTAGGGTTAAAGGCTACATTTTAGCCCTCGGGTGACAGGTAAGAATGTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251615.1 lncRNA downstream 165891 4219579 ~ 4222285 (-) True LOC122350738
TU90302 lncRNA downstream 166847 4220397 ~ 4221329 (-) True G60995
TU90260 lncRNA downstream 324523 4062905 ~ 4063653 (-) True G60963
TU90222 lncRNA downstream 363442 4020883 ~ 4024734 (-) True G60937
TU90233 lncRNA downstream 381394 4001619 ~ 4006782 (-) False zgc:113363
TU90411 lncRNA upstream 4031 4393213 ~ 4397074 (-) False G61071
TU90425 lncRNA upstream 24103 4413285 ~ 4418105 (-) True G61075
TU90402 lncRNA upstream 34546 4423728 ~ 4430402 (-) True G61062
TU90433 lncRNA upstream 85260 4474442 ~ 4474683 (-) True G61083
TU90469 lncRNA upstream 282991 4672173 ~ 4673000 (-) True G61114
XM_043246708.1 mRNA downstream 72440 4311724 ~ 4315736 (-) True zgc:86609
XM_043247423.1 mRNA downstream 158636 4226724 ~ 4229540 (-) True abt1
XM_043245984.1 mRNA downstream 172797 4185253 ~ 4215379 (-) False cdk16
XM_043245982.1 mRNA downstream 172799 4185253 ~ 4215377 (-) True cdk16
XM_043245983.1 mRNA downstream 172803 4185253 ~ 4215373 (-) False cdk16
XM_043247657.1 mRNA upstream 43800 4432982 ~ 4466057 (-) False slc6a8
XM_043247656.1 mRNA upstream 43800 4432982 ~ 4466057 (-) False slc6a8
XM_043247654.1 mRNA upstream 43800 4432982 ~ 4466056 (-) True slc6a8
XM_043247611.1 mRNA upstream 120887 4510069 ~ 4655469 (-) True plxna3
XM_043247745.1 mRNA upstream 285144 4674326 ~ 4689480 (-) False ptpn18
TU90343 other downstream 80677 4300992 ~ 4307499 (-) True G61023
TU90264 other downstream 296019 4088724 ~ 4092157 (-) True G60967
XR_006251616.1 other downstream 537586 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 1353084 3032467 ~ 3035092 (-) True G60679
TU89698 other downstream 1575069 2794134 ~ 2813107 (-) False rad9b
TU90417 other upstream 4031 4393213 ~ 4397074 (-) True G61071
TU90966 other upstream 798133 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 807429 5196611 ~ 5197889 (-) False LOC122349940
TU90970 other upstream 813316 5202498 ~ 5207522 (-) False LOC122349940
XR_006251611.1 other upstream 952551 5341733 ~ 5351276 (-) False nr1h5

Expression Profile