RNA id: TU90425


Basic Information

Item Value
RNA id TU90425
length 454
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G61075
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4413285 ~ 4418105 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGGTGAACAGTTTAATACAGCATATTCATCACAGTCCAGGGTGCAATTGTCCCACCCACATGTCCTGTAGTTACACCATTTGTCATTAACCTGGCAGCAGGTTAAGGTTTCTGCTCCTTGGAAGCCTTTAGGGTCTtgaaaaaatggcttttttatgCACAACTCACTCACCTCCTGcagtttctcattttcctccaTGTACTTCTTTGCAGCATCATTTGCTCCCTCCGCCTGCTTCTTAAAGGCTTCATTAGAGGCCATCAGCGTAGCCTGCTGAGACAGCAGTGTGGCCAGACGTCTCAGCAcaaacacagGAGCAGAGCGAAGCCGGCGATGTATTCGTTCCTCTGGGCTCTGAAGAGTTTCATGTGGATGTGCTCAATGGCCACAGGGTTGTTGCTCAGATCCACTTTCTCTGTCACACTGTATTTTCTCACTTCTCTAAATGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90411 lncRNA downstream 16211 4393213 ~ 4397074 (-) False G61071
TU90407 lncRNA downstream 24103 4388176 ~ 4389182 (-) True G61067
XR_006251615.1 lncRNA downstream 191000 4219579 ~ 4222285 (-) True LOC122350738
TU90302 lncRNA downstream 191956 4220397 ~ 4221329 (-) True G60995
TU90260 lncRNA downstream 349632 4062905 ~ 4063653 (-) True G60963
TU90402 lncRNA upstream 5623 4423728 ~ 4430402 (-) True G61062
TU90433 lncRNA upstream 56337 4474442 ~ 4474683 (-) True G61083
TU90469 lncRNA upstream 254068 4672173 ~ 4673000 (-) True G61114
TU90507 lncRNA upstream 320049 4738154 ~ 4740201 (-) True G61135
TU90549 lncRNA upstream 405909 4824014 ~ 4826939 (-) True G61170
XM_043246708.1 mRNA downstream 97549 4311724 ~ 4315736 (-) True zgc:86609
XM_043247423.1 mRNA downstream 183745 4226724 ~ 4229540 (-) True abt1
XM_043245984.1 mRNA downstream 197906 4185253 ~ 4215379 (-) False cdk16
XM_043247657.1 mRNA upstream 14877 4432982 ~ 4466057 (-) False slc6a8
XM_043247656.1 mRNA upstream 14877 4432982 ~ 4466057 (-) False slc6a8
XM_043247654.1 mRNA upstream 14877 4432982 ~ 4466056 (-) True slc6a8
XM_043247611.1 mRNA upstream 91964 4510069 ~ 4655469 (-) True plxna3
XM_043247745.1 mRNA upstream 256221 4674326 ~ 4689480 (-) False ptpn18
TU90417 other downstream 16211 4393213 ~ 4397074 (-) True G61071
TU90343 other downstream 105786 4300992 ~ 4307499 (-) True G61023
TU90264 other downstream 321128 4088724 ~ 4092157 (-) True G60967
XR_006251616.1 other downstream 562695 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 1378193 3032467 ~ 3035092 (-) True G60679
TU90966 other upstream 769210 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 778506 5196611 ~ 5197889 (-) False LOC122349940
TU90970 other upstream 784393 5202498 ~ 5207522 (-) False LOC122349940
XR_006251611.1 other upstream 923628 5341733 ~ 5351276 (-) False nr1h5
XR_006251650.1 other upstream 1058108 5476213 ~ 5510943 (-) False pip5k1bb

Expression Profile