RNA id: TU90469



Basic Information


Item Value
RNA id TU90469
length 828
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G61114
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4672173 ~ 4673000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTATATCAAAAAAATCCCTGTAGATGTGTTTTTAGCCTGAGGGAGTTTTCCTCTGAAGGTGTTGCAGTCAACAGAGACTCCATTTTTAGTCATGCAGTGAATATTTTGACTCCAGCCTTGCTCCAACTCTCTCTCTttatgcgcgtgtgtgtgtgtgtgtgtgtgtgtgaagagagagagcgctATAGAGGAGTCTGAGGACACACAGACGGATGGAAactcataagaaaaaaataacaatgaaacagcaacagacagacagagaggagagactGTTTGCTAGTGTTCTGCTAATGGCTGCTCTGTTAGCAGTAAAGCCTGTAGGGTaagtatgcatgtgtgtgtgtgtgtgtgtgtgtgttggtctcCTCTGTGCTCCTCTGGCTGGGTAATCCCATTCAGCACATGCTAATGTGAAACCAGATTCTAATGACCTTCTGCCATGGCTTTTCAACCCAGGCCTGGAGCAATCTCACAGCAACATCTCATAGATGCTCTCTCCAAGAACGCCCCCACAGTAGCACACAAGCATCCCAGTGAACAAACCATCTTACCATAAAATCTCTCTTATCCACACCATCGCCGCAGAGCGACTCAGACGTTATGGTTTGAgtgaattattattgtaattttacagtacaatCACAGTTTCTGGCAGCATCCCAATCTGCATAGTATCAGTTCTATACAGTGTACCACAGTCATGACAGCAGATCCTGGGAGAGAAGATTAGGGGCAGTGCGTGCTTTTTtgtttcaactttttttaaagaagcttttTGTCTGATCGTGTTGTATGTAGAATAACGTTCAAAAATTTGGGGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90433 lncRNA downstream 197490 4474442 ~ 4474683 (-) True G61083
TU90402 lncRNA downstream 241771 4423728 ~ 4430402 (-) True G61062
TU90425 lncRNA downstream 254068 4413285 ~ 4418105 (-) True G61075
TU90411 lncRNA downstream 275099 4393213 ~ 4397074 (-) False G61071
TU90407 lncRNA downstream 282991 4388176 ~ 4389182 (-) True G61067
TU90507 lncRNA upstream 65154 4738154 ~ 4740201 (-) True G61135
TU90549 lncRNA upstream 151014 4824014 ~ 4826939 (-) True G61170
TU90564 lncRNA upstream 179279 4852279 ~ 4853456 (-) True G61183
TU90567 lncRNA upstream 193981 4866981 ~ 4867186 (-) True G61186
TU90570 lncRNA upstream 203960 4876960 ~ 4885431 (-) True G61188
XM_043247611.1 mRNA downstream 16704 4510069 ~ 4655469 (-) True plxna3
XM_043247657.1 mRNA downstream 206116 4432982 ~ 4466057 (-) False slc6a8
XM_043247656.1 mRNA downstream 206116 4432982 ~ 4466057 (-) False slc6a8
XM_043247654.1 mRNA downstream 206117 4432982 ~ 4466056 (-) True slc6a8
XM_043246708.1 mRNA downstream 356437 4311724 ~ 4315736 (-) True zgc:86609
XM_043247745.1 mRNA upstream 1326 4674326 ~ 4689480 (-) False ptpn18
XM_043247744.1 mRNA upstream 1326 4674326 ~ 4689478 (-) True ptpn18
XM_043247747.1 mRNA upstream 1326 4674326 ~ 4689342 (-) False ptpn18
XM_043247746.1 mRNA upstream 1326 4674326 ~ 4686702 (-) False ptpn18
XM_043247543.1 mRNA upstream 180786 4853786 ~ 4860301 (-) True si:dkey-8e10.3
TU90417 other downstream 275099 4393213 ~ 4397074 (-) True G61071
TU90343 other downstream 364674 4300992 ~ 4307499 (-) True G61023
TU90264 other downstream 580016 4088724 ~ 4092157 (-) True G60967
XR_006251616.1 other downstream 821583 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 1637081 3032467 ~ 3035092 (-) True G60679
TU90966 other upstream 514315 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 523611 5196611 ~ 5197889 (-) False LOC122349940
TU90970 other upstream 529498 5202498 ~ 5207522 (-) False LOC122349940
XR_006251611.1 other upstream 668733 5341733 ~ 5351276 (-) False nr1h5
XR_006251650.1 other upstream 803213 5476213 ~ 5510943 (-) False pip5k1bb

Expression Profile