RNA id: TU90570



Basic Information


Item Value
RNA id TU90570
length 608
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G61188
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4876960 ~ 4885431 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AACACATCTAGGTTTCTGTCTGTGCAGGCGTCTCATTGCCAGAGTGATGCAAGTTTCAGGAAGGGTTTAGACACACTAGCAGTCCTGTCCAAGACTGGATGTGACTGCAACATTGTCGAAAAAAGCTAagtgtttaaacatttactgtACAATCACTGTACTATTGCACGAAACAACCAAATTTTTAGGAAGATGCTAATCTTaatctgtttttggttttgacGTTTTTCAGCAGTTGTGAAGATGAAGACCGAAAGCCTGAGAAGATAAAGCGTGTAAAAACACGATGAGAACCTGCACACCAGGATCTGGAGATATCCAGCCTGTCTGACGAGTCCAAGACTAGATCAACTAGTGGTCAACTTCCTTCATCTTATAATTGGATGACCAAATTAATCTTATTTAGGCCATATtgcataatttgtttattattctaaatattaagaaggtaaaatgaatgtaatgtaatgtgagGATTGGTGGGGCGAGATTTGACACAAGAGgtgctttttatacatttttaataaacattttaggtgAATTGGCAAATCCAGTCtgtttgtctttattgtatCGTACAGTAAGAAGGTTTTTACACTTGTATAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90567 lncRNA downstream 9774 4866981 ~ 4867186 (-) True G61186
TU90564 lncRNA downstream 23504 4852279 ~ 4853456 (-) True G61183
TU90549 lncRNA downstream 50021 4824014 ~ 4826939 (-) True G61170
TU90507 lncRNA downstream 136759 4738154 ~ 4740201 (-) True G61135
TU90469 lncRNA downstream 203960 4672173 ~ 4673000 (-) True G61114
TU90582 lncRNA upstream 23409 4908840 ~ 4909470 (-) True G61196
TU90596 lncRNA upstream 48138 4933569 ~ 4933797 (-) True G61209
XR_006251549.1 lncRNA upstream 64202 4949633 ~ 4955156 (-) True LOC122349981
TU90599 lncRNA upstream 67624 4953055 ~ 4953446 (-) True G61212
TU90605 lncRNA upstream 76152 4961583 ~ 5005566 (-) True G61216
XM_043247543.1 mRNA downstream 16659 4853786 ~ 4860301 (-) True si:dkey-8e10.3
XM_043247745.1 mRNA downstream 187480 4674326 ~ 4689480 (-) False ptpn18
XM_043247542.1 mRNA upstream 301823 5187254 ~ 5187921 (-) True LOC122350811
XM_043246081.1 mRNA upstream 310321 5195752 ~ 5207454 (-) True LOC122349940
XM_043247304.1 mRNA upstream 455963 5341394 ~ 5351279 (-) False nr1h5
XM_043247303.1 mRNA upstream 455963 5341394 ~ 5351272 (-) True nr1h5
XM_043247863.1 mRNA upstream 468188 5353619 ~ 5361985 (-) True slc66a1
TU90417 other downstream 479886 4393213 ~ 4397074 (-) True G61071
TU90343 other downstream 569461 4300992 ~ 4307499 (-) True G61023
TU90264 other downstream 784803 4088724 ~ 4092157 (-) True G60967
XR_006251616.1 other downstream 1026370 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 1841868 3032467 ~ 3035092 (-) True G60679
TU90966 other upstream 301884 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 311180 5196611 ~ 5197889 (-) False LOC122349940
TU90970 other upstream 317067 5202498 ~ 5207522 (-) False LOC122349940
XR_006251611.1 other upstream 456302 5341733 ~ 5351276 (-) False nr1h5
XR_006251650.1 other upstream 590782 5476213 ~ 5510943 (-) False pip5k1bb

Expression Profile