RNA id: TU90605


Basic Information

Item Value
RNA id TU90605
length 1414
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G61216
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4961583 ~ 5005566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATTTACAGCTAATGCCACTGCAATCTGTCCATCTCTACATCTCAAATGACATCTGCTGATCGTCTGTTTAAAGGCCACCGGCCGATCGAACAAGGCAAAAAGATCATACCCAGGAAACCagaatgaatgttaaaaaaatatttattgacaattgtgtaaaaaaatagctttctaaacataatttacatcgctaaatcagaaaaacaaaatccgAGTTGCAATCATGCCTACTAAAGGTGAAAAAGAAACCATGTAAAATCACTCGTTCCTCAAACATTCATGAGGTCATTTCCTCCAACATATGCACAGCAGACAGATTAAATTAGGTGACGAACACGACTGGTATGGTTTACCATCAGCAGTACTCCATGCATCGAGAAACAGAAGTGCTTTCGAGGATTATTTACAACATATGTACATATCGTTCTCAAAAAAGGctttaaatatggtaaaaatacatttaaataatttgtgggCCCTTCGGTGGTGGAATGAGAAAAACTTTGCAGAAGATCGcttctttataaataaataaataaatacttccaCTTCCGTctcgtttcatttttttttgtttgtttttaagacacTCCAATAAATATCATTTACACATAAGCCTCGCCGCGGAATCGAGTCATCTGACCGAGCtatttacaatataaacaaaaataatatgcagAAAAATGTAGTCTTTTTACGCCCCAAGTTGCATTGCTTTGTGCATCTGTGACAATGAGTGGTAGTCGTTGAGGGTTACTCGGTACAAaggaagaggaaaaagaaacgGCGGTTTTGAAAGAGTGAGGTAAGACTTTTCGTTCTGCAGAGGTTCGTGAGGTCGATTTGGTTACTCTCTCTGACGTATTAGAGTAAGACCGACAGTTACCCGCCGGCGAGCGGGTAAAGTGGAAGCGAGAAGGTAAAAAAAGACATCTGGTTAAGGAGTAGAGTGTTACAGTGGCTATTACTCAATTCAAGtatatccaaaaaaaaactaaacgacaaaaaaaaaaaacccttgatCTTGCACAGAAGGCACTAAAATTATTAAGCTCGGCTGATCTGCTTCCTAAAAGGAACAGCCCTGACGGCGCGCCGAAGCTGGCGGATCGGCCCTCGTCGCAGCGCCGCTGCATCCTCCCTACGCTGGCCGAGATGGGCTTCTCGATCTACCCGTGTCCGACAGCAGTGTTGACAGTCATTTGGTTACTACGAGCCAGACTCGAGGGACCCTGAGCCACAGGGGGGCGGGAGACGAGAGACAACAGATCTCACTAAAAGGTGGAcctctcccttttttttttggcctagCCTAGACCTCCCGCCTAGCAGCAATGCTCGAAACAAAAGAATAACAtgtggtgttgttgttgtttttttttttttttttgttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251549.1 lncRNA downstream 6427 4949633 ~ 4955156 (-) True LOC122349981
TU90599 lncRNA downstream 8137 4953055 ~ 4953446 (-) True G61212
TU90596 lncRNA downstream 27786 4933569 ~ 4933797 (-) True G61209
TU90582 lncRNA downstream 52113 4908840 ~ 4909470 (-) True G61196
TU90570 lncRNA downstream 76152 4876960 ~ 4885431 (-) True G61188
TU90965 lncRNA upstream 137633 5143199 ~ 5266038 (-) True G61459
TU90994 lncRNA upstream 317546 5323112 ~ 5366348 (-) False G61476
TU90998 lncRNA upstream 317546 5323112 ~ 5339952 (-) True G61476
TU91004 lncRNA upstream 331421 5336987 ~ 5352457 (-) True G61478
TU91050 lncRNA upstream 564838 5570404 ~ 5573893 (-) True G61502
XM_043247543.1 mRNA downstream 101282 4853786 ~ 4860301 (-) True si:dkey-8e10.3
XM_043247745.1 mRNA downstream 272103 4674326 ~ 4689480 (-) False ptpn18
XM_043247542.1 mRNA upstream 181688 5187254 ~ 5187921 (-) True LOC122350811
XM_043246081.1 mRNA upstream 190186 5195752 ~ 5207454 (-) True LOC122349940
XM_043247304.1 mRNA upstream 335828 5341394 ~ 5351279 (-) False nr1h5
XM_043247303.1 mRNA upstream 335828 5341394 ~ 5351272 (-) True nr1h5
XM_043247863.1 mRNA upstream 348053 5353619 ~ 5361985 (-) True slc66a1
TU90417 other downstream 564509 4393213 ~ 4397074 (-) True G61071
TU90343 other downstream 654084 4300992 ~ 4307499 (-) True G61023
TU90264 other downstream 869426 4088724 ~ 4092157 (-) True G60967
XR_006251616.1 other downstream 1110993 3845453 ~ 3850590 (-) False lhfpl4b
TU89795 other downstream 1926491 3032467 ~ 3035092 (-) True G60679
TU90966 other upstream 181749 5187315 ~ 5187916 (-) False LOC122350811
TU90968 other upstream 191045 5196611 ~ 5197889 (-) False LOC122349940
TU90970 other upstream 196932 5202498 ~ 5207522 (-) False LOC122349940
XR_006251611.1 other upstream 336167 5341733 ~ 5351276 (-) False nr1h5
XR_006251650.1 other upstream 470647 5476213 ~ 5510943 (-) False pip5k1bb

Expression Profile