RNA id: XM_043246081.1


Basic Information

Item Value
RNA id XM_043246081.1
length 2135
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC122349940
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5195752 ~ 5207522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCTCTGCGCGTGGCCGTCTAGCTCTGTCTGAGGCGCGTGAGTGCACGGGTACATAGGCATTATCTTCATTTCCAGTTTCATCGGCAAATTACAGAATGCGGAGGTGAAAACGGACGGACTCGCCGATCGAGGCACGAACCCTTGACGGTATATGCCGGTACCACACCAGTTGGTGTTATTTTTCTTATCTGAAAGCCGGTTCTGAGCGAGAATCACGCATGCATTCAAACAGAGGATTATCGCGGAGGAACTGCCTTGAAACCATGAGCTGCAGTTGGGGGACGGAGCTGTGGGATCAGTTTGATAATTTGGAGAAACACACTCAGTGGGGCATTGAGTTTTTGGAACGCTACACCAAGTTTGTGAAGGAGCGGTCTGAAATTGAACTGAGCTATGCTAAACAGATCAGGAATCTGTCCAAGAAGTATCAGCTCAAGAAGAACTctaaagaggaggaggaatTCAAGTATACCACATGTAGAGCGTTTCTAATGACTTTAAATGAGCTGAACGACTACGCGGGTCAACACGAGGTCATCGCCGAAAACCTGTCCACTCAGATAATCGCAGAGTTGAGCCGCTACACTCAAGAACTGAAGGCTGAACGCAAATCGatgtgtttttttgtatctcTTTCCTCGCATTTCCACGATGGCCGCAGAGCTCAACAACACATTGAGAATTCCTGGAAGCAGCTGGAATCGaGTAAAAGAAGATTCGAGCGAGACTGTAAGGAAGCGGATCGCGCTCAGCATTACTTTGACAAGATGGACGCCGACATTAACGTGACTAAAGCAGATGTGGAAAAGGCACGGCAGCAGGCTCAGATGAGACACCAGATGGCTTCTGACAGCAAGAATGAATATTCCTCATACCTTCAGAAGTTCAACCAGGAACAGAACGAACATTATTACACCATCATCCCTAATATTttccagAAGATCCAGGCCATGGAGGAGAAGAGGATAGAGCGGATGGGAGAGTCGCTGAAGACGTTTGCGGAGGTCGATCGTCAGATTCTGCCCATCATCGGGAAATGCCTGGATGGAATAACACAAGCGGCCGACTCCATCGAACCCAAGAATGACTCCTCTCAGGTCATAGAGTCATATAAGTCTGGGTTCGAGCCTCCCGGCGATGTGGAGTTTGAAGACTACGGCCAGGCGATGAAGAGGACGGTGTCTGAGACCAGCCTCACTAACTCACGCCCGGAGAGCAAAGCAGACCGCTCCAGCAAGAGCAAGAGCAAAACCCTCTGGCCTTTCATTAAGAAAAACAAGGTAACACACACCGGCGTCACGTTCACTCGCAGTTACTCCGATCTGACAGAAAACCAAGCTCCAGTAAATCCGAACAGCTGACACCTCGCGAGAGCGATTGTTTGATGTGTTTctgtaagtttttgttttagtttgtgcTTGTTTATTAGTTTGGATTCTGTAGTTTTACTGTAGTATCTGTAGATGCTGTTATTCGTTTGCCGCCATCGTTCTCCTTTCCTTTCCCCTCCCTGTGTTCACCTGCACGAAAATATGTTCATCCTGACGCTCCACCGATAACGTACTAATGCACGGCCCGAGGGGCCTCACCTTTGACCTTTGCAGAGAAACGTAACTCTTTATTCCCGTGTCGTCCTTTCAAACCGAGAGTAACTTCCTTTTCTCCGGCCACCCATCGGTGCTGTTCTCATGGTAACCACATTCTTCTTCCTGTTCCTCGtcttcctctgtcttcttgTGACCTTTGACGTTTGTGTCAAAGGCTCCGCTCTTACTGAGCATGCTCAGTCCAAACCCCGCCTAACCTCGCAGGACCAGGATGTGAGCATTAACACTGTCATACGTATTTAAtgaggtgtgtctgtgtggctATGGGCGGAATGGAGAACTAGTTCATACTGtgcagtatatactgtatactgtttACGGTTGtgtagtttatttaatattttagtcgGCAAGGACGCGTTAAATTCATCTAAAATGATAGTGAAGACTTCCATAATGGTAtattttcaagtaaatgctgctattttgaactttctatttatttaggatgtacaaaatgttaagaaaacatgaaaatatgacCGTTTTcgatctgaaaaataaaaatctgccaattagattgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90605 lncRNA downstream 190186 4961583 ~ 5005566 (-) True G61216
TU90603 lncRNA downstream 192869 5001567 ~ 5002883 (-) True G61215
XR_006251549.1 lncRNA downstream 240596 4949633 ~ 4955156 (-) True LOC122349981
TU90599 lncRNA downstream 242306 4953055 ~ 4953446 (-) True G61212
TU90596 lncRNA downstream 261955 4933569 ~ 4933797 (-) True G61209
TU90994 lncRNA upstream 115658 5323112 ~ 5366348 (-) False G61476
TU90998 lncRNA upstream 115658 5323112 ~ 5339952 (-) True G61476
TU91004 lncRNA upstream 129533 5336987 ~ 5352457 (-) True G61478
TU91050 lncRNA upstream 362950 5570404 ~ 5573893 (-) True G61502
TU91067 lncRNA upstream 375461 5582915 ~ 5584720 (-) True G61507
XM_043247542.1 mRNA downstream 7831 5187254 ~ 5187921 (-) True LOC122350811
XM_043247543.1 mRNA downstream 335451 4853786 ~ 4860301 (-) True si:dkey-8e10.3
XM_043247745.1 mRNA downstream 506272 4674326 ~ 4689480 (-) False ptpn18
XM_043247304.1 mRNA upstream 133940 5341394 ~ 5351279 (-) False nr1h5
XM_043247303.1 mRNA upstream 133940 5341394 ~ 5351272 (-) True nr1h5
XM_043247863.1 mRNA upstream 146165 5353619 ~ 5361985 (-) True slc66a1
XM_043247338.1 mRNA upstream 155272 5362726 ~ 5384419 (-) False trim33
XM_043247336.1 mRNA upstream 155272 5362726 ~ 5384418 (-) True trim33
TU90966 other downstream 7836 5187315 ~ 5187916 (-) False LOC122350811
TU90417 other downstream 798678 4393213 ~ 4397074 (-) True G61071
TU90343 other downstream 888253 4300992 ~ 4307499 (-) True G61023
TU90264 other downstream 1103595 4088724 ~ 4092157 (-) True G60967
XR_006251616.1 other downstream 1345162 3845453 ~ 3850590 (-) False lhfpl4b
XR_006251611.1 other upstream 134279 5341733 ~ 5351276 (-) False nr1h5
XR_006251650.1 other upstream 268759 5476213 ~ 5510943 (-) False pip5k1bb
XR_006251542.1 other upstream 398108 5605562 ~ 5609570 (-) False c8h9orf116
TU91084 other upstream 406875 5614329 ~ 5617664 (-) True G61513
TU91112 other upstream 712507 5919961 ~ 5925347 (-) False LOC122350596

Expression Profile