RNA id: TU91454


Basic Information

Item Value
RNA id TU91454
length 524
lncRNA type sense_over
GC content 0.49
exon number 3
gene id xpr1a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6875349 ~ 7056429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGATGGCGGACAACAGCTACTTCACAGACGCCCAGAGAGTCCTGAGAGAGAAAGTCACTCCCAGAGACGCCCGTGCTGGGGCTGTAGCGCTGTCGTTGAGGCACCCGTCTCTGAAAGTAGAAGGAGGTTACTTTTAGTATCTTTCTGTTTCACTTTGAACGGGGTAATATGCGGGACCGGGAAATAGTGGACTGTGACAGACCGGACGGGATTTAGACAACGCAGGCGGCTCTGTAACTTAGtgacagaaataacaaaagCCCCAAAAGAAGACGCTGCCCGACTCGAGGATACTATTATAGTCCGTCTGTGGATTTCTGCTCCGCCAGCATGAAGTTTGCGGAGCACCTGTCTGCCCATATTACTCCAGAATGGAGAAAACAATATATTCAATACGAGGCTTTCAAGGAGATGCTTTATGCGGCCCAGGACCAGGCCCCATCCATAGAAGtCACAGATGAAGACACTGTCAAAGCGGTATTATGCCAAGTTTGAAGAAGAAGTTCTTTCAGGCGTGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91452 lncRNA downstream 154636 6862028 ~ 6862954 (-) True G61782
TU91286 lncRNA downstream 359306 6657498 ~ 6658284 (-) True G61663
TU91262 lncRNA downstream 455672 6561450 ~ 6561918 (-) True G61640
TU91251 lncRNA downstream 465879 6551404 ~ 6551711 (-) True G61629
TU91181 lncRNA downstream 549174 6467953 ~ 6468416 (-) True G61582
TU91585 lncRNA upstream 218170 7274590 ~ 7281165 (-) True G61860
TU91592 lncRNA upstream 249692 7306112 ~ 7308340 (-) True G61865
XR_006251630.1 lncRNA upstream 321335 7377755 ~ 7378459 (-) True LOC122350886
XR_006251632.1 lncRNA upstream 333868 7390288 ~ 7394209 (-) True LOC122350888
TU91596 lncRNA upstream 489390 7545810 ~ 7548323 (-) True G61868
XM_043247679.1 mRNA downstream 142625 6860907 ~ 6874965 (-) False sin3b
XM_043247678.1 mRNA downstream 142625 6860907 ~ 6874965 (-) True sin3b
XM_043246033.1 mRNA downstream 157884 6850516 ~ 6859706 (-) True def6a
XM_043246637.1 mRNA downstream 167875 6848473 ~ 6849715 (-) True ndufb11
XM_043246636.1 mRNA downstream 170237 6841786 ~ 6847353 (-) True rhoaa
XM_043246385.1 mRNA upstream 35030 7091450 ~ 7102993 (-) False lhx4
XM_043246384.1 mRNA upstream 35030 7091450 ~ 7102992 (-) True lhx4
XM_043247443.1 mRNA upstream 55716 7112136 ~ 7135496 (-) True qsox1
XM_043246342.1 mRNA upstream 80642 7137062 ~ 7168792 (-) False cep350
XM_043246343.1 mRNA upstream 80642 7137062 ~ 7168792 (-) False cep350
TU91442 other downstream 200866 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 574608 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 1092243 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1399926 5614329 ~ 5617664 (-) True G61513
XR_006251542.1 other downstream 1408020 5605562 ~ 5609570 (-) False c8h9orf116
TU91479 other upstream 38478 7094898 ~ 7100932 (-) False lhx4
XR_006251629.1 other upstream 621996 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 1060588 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 1335925 8392345 ~ 8416553 (-) False eps15
XR_006251692.1 other upstream 1371195 8427615 ~ 8427687 (-) True LOC122351129

Expression Profile