RNA id: TU92903


Basic Information

Item Value
RNA id TU92903
length 2183
RNA type TUCP
GC content 0.44
exon number 2
gene id G62760
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10389183 ~ 10392043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTAATCTGGCAGTAATGTGCATCGTGTGGCAAAATTACTTTATGAGGAGCGCGTGGAACTACTTTCTTGCGTAGTCTGGCTTTTTGGGATTTTCTGGTGCTGTGCTTCTGTCTGCCCGTGGTGGTCTTTAACGAACTCACCAATAAGAGGCTGCTGGGAGATTTCTCCTGCAGAGTTGTGCCTTACATAGAGGTAACCTCTCTCGGCGTGACAACCTTCAGTCTGTGTGCTTTGGGCATTGACCGCTTCCACGCTGCCACAAGCTCCATGCCAAAGGCCCGGCGAGTTGAGCGCTGTCAGAAGGTCCTGGCCAAGCTGGCGGTGGTGTGGATTGGCTCTATGGTGCTGGCGGCTCCCGAGCTGCTCCTGTGGCAGCTGCATCAGGTGACACCCCCCGGTCAGGGTGACCAAGTGGACACCTGCATCATGAGTCCATATCCAGATCTCCCCGAATCCATCTATTCTCTCGTTATCAACTACCACGACGCACGCATGTGGTGGTACTTCGGCTGTTACTTCTGTCTACCAGTTGTCTTCACCTTGCTCTGTCAACTGGCCACCTGCCATGTATCCGGCGGGAGCGGAAGTTCTCCCAAGCGGCCCGAGGAGCGATCTCcatccaaaaaacaaaagcttcaGCACGCTCAGCAAATCGAACGGCAGCTCAACTGCACTGTCATGCGGCCCTGGCGGTGGTCTATGGTGTCTGCACGCTGCCGGAGAACGTTTGCAACCTGACTTTGGCGTACGCTCCCATCCAGGTGTCCGAGGAGGTGACTTCTCTTCTGGCCCTCATAAACCAGTTCTTTCTGTTCTTTAAGTCATCCGTGACACCagtgctgctgctttgcttgtGCAAGTCTCTGGGCCAGGCCTTCATGgactgttgctgctgctgctgtgaagAATGCCAACCGAGCAACTCTTCATCCACCCAAAATGTCGCTGAAGGCAAGCTCAAGACCACCAATGATGTGTCCTCCATTTTTTTTGACAAAGCCAAGGACAGTTCAACCATCTTGTCCATTGGCAGCTGAGTAGGCCGATTCCGTCCCCAGTTGATGACATCATGAGATGACATGGAACCTACAACCTACCTTCTTCTCGTTATCCACAAGTGGCCATCATTGCATGAGCAGTTCTTACCGTTATGTTGGAGCATGTTAGCATTGTTCGACTAATCTGAGGCCAAAATTGCAATTTTGGTTTTGGTACAAAcattgtgggaaaaaaagatttttaggaTCTAAAGTTTGCCATAAATCTGAAGATTCATTCCATAATATCTCAGGATGGCTCAGTGTACCTATAACGTCTTAAAAGGATAATTCACCCAATAATTTACCTACCctaatgtcatttcaaaccattGACTTTTTGTCATATGTAGAACACAACACATAACGTTTATGCCCATACCATGAAAGCCAATGGGGTCCCGTGTTGTTTTGCACTCCATTGACTTTCACAGTTCTTCAttatatcttcttttgtgtttgaaatgaagtcatacaggtttggaacaacattagaGGGAGTAAATGATGCCAGAATTTCGATTTTTATGAACTATCCCCTAATATATCACCAGGGTCTCCGCTCAAGTCAGTATAATTTTGACTTCAGATGTCCCACATTCATAGTTCTACTTTTCTGTACAGACAATTATGAATTTTACACATAGCTCAGAGTGTATAAATATTTAGCGAAACGCTCTGTGAGATCAGAAACGCAGTGAATACTACCAGATCACAAATAACACATCATCTTGTTCATATAACAGGAAAAacttgcaaaacaaaaatgtttttgtctgttaCTCAGGCAAATGTTATTTATcactaattttaattaatgccaCTTTTTTCATAACCACTGAACATTCGTCTACACCGTTGATTGTCAACTTCTGTATATAAGCACTCAGCTGTATTAGAATGTAAATAGGTTATTTTTGAAAGCAACCTCCTTGAGCAAACTAGCTTTTCAAGCCCCTTCATGTAGTACGGTAggacaaaaaagacaaattgaATGGTTTACCTCCTCAAGGGACTATTGTAACTTTTGCACATAGCTGCTTTCATAAGcaaattcttttaaaagtcCATAAACAGTTGATAAAACTCTATTCAATAAAtgcctttaaataattaatgttgTCTCGTTCATTTTTGAAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92973 lncRNA downstream 15852 10370333 ~ 10373331 (-) True G62821
TU92967 lncRNA downstream 61975 10325741 ~ 10327208 (-) True G62817
TU92955 lncRNA downstream 87298 10301662 ~ 10301885 (-) True G62805
TU92949 lncRNA downstream 124422 10263818 ~ 10264761 (-) True G62800
TU92943 lncRNA downstream 135927 10250633 ~ 10253256 (-) True G62795
TU93021 lncRNA upstream 39738 10431781 ~ 10434116 (-) True G62831
TU92986 lncRNA upstream 48721 10440764 ~ 10480051 (-) True G62826
TU93006 lncRNA upstream 53086 10445129 ~ 10484599 (-) False G62829
TU93014 lncRNA upstream 53086 10445129 ~ 10484599 (-) False G62829
TU93028 lncRNA upstream 128616 10520659 ~ 10522487 (-) True G62835
XM_043247531.1 mRNA downstream 50514 10329776 ~ 10338669 (-) False gls2a
XM_043247530.1 mRNA downstream 50514 10329776 ~ 10338669 (-) True gls2a
XM_043247452.1 mRNA downstream 68810 10316425 ~ 10320373 (-) True cpt2
XM_043247453.1 mRNA downstream 68812 10316425 ~ 10320371 (-) False cpt2
XM_043246944.1 mRNA downstream 88877 10298359 ~ 10300306 (-) True tmco1
XM_043246165.1 mRNA upstream 95747 10487790 ~ 10491200 (-) True LOC122349990
XM_043246120.1 mRNA upstream 134304 10526347 ~ 10528717 (-) True LOC122349964
XM_043246124.1 mRNA upstream 137400 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA upstream 137400 10529443 ~ 10533338 (-) True LOC122349966
XM_043246747.1 mRNA upstream 434386 10826429 ~ 10961990 (-) True LOC122350349
TU92747 other downstream 419698 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 427482 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1126357 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1731897 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1739218 8647281 ~ 8649965 (-) False mrps36
TU92984 other upstream 48721 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 148176 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 595403 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 704959 11097002 ~ 11131207 (-) False LOC122349915
TU93259 other upstream 931861 11323904 ~ 11345858 (-) False LOC122350269

Expression Profile