RNA id: TU92977



Basic Information


Item Value
RNA id TU92977
length 739
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G62824
representative False

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10381717 ~ 10443630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTAAAAGAAGAAATTCTTGCCAAGTCCTCTGTAGCGTGAAAGCTGTTGGTAGATCTGCTTCATCCTCTCGATGTTGAGGCGGCTCGCTTCAGCGTGGTTCACCATTGGTTTTGGGTAATGGACACCAATGATGCACTTTGCAGCGGCTTGCACAGAGTCTGGGGCGTTCCATGGGTCGTAGATGTATTTGGCAGGGAAACCTCGGAGAATAGGTAAATATCgtctgaaagaacaaagaaagattaAACCACAGTCTTATCACAAACATGAGGAAGGTTATGCGAGATGGTTATTGGATTCCCATGTTTGAACAAGCAGGTACAAAAAGAACAACAGAGCTTCTCGGATTACAGCAAGCAGCTTGTGTTAGCGATTAATTTACAGggattttcacacatttaactgtgcaatattgtaattgtgaatgtatactgtatatatacggTCAGCACACCaccataacaacaacaacaaaataacaaatgcaaaagaacTGAAAAATTCAAGCTCTACTGAAATCTGGACTTGCGTCTCTCCTCCAGGTCCCAGGGACAGAAAAGGCCACCTACCTAAGGTGCTCCACCTTACCAGAGCGTGGGGACGGAGGGCTGCAGGAGGCACGGCTCGCAGACAGGCGGACGCAGTTTAAACAGGACAACAGGTCCCGCCTGTGCTGAGACACTACGGAGATTCCTACTACAACACGCATTAGAAAGCAGAGGCAGTGACCAGGCCCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92973 lncRNA downstream 8386 10370333 ~ 10373331 (-) True G62821
TU92967 lncRNA downstream 54509 10325741 ~ 10327208 (-) True G62817
TU92955 lncRNA downstream 79832 10301662 ~ 10301885 (-) True G62805
TU92949 lncRNA downstream 116956 10263818 ~ 10264761 (-) True G62800
TU92943 lncRNA downstream 128461 10250633 ~ 10253256 (-) True G62795
TU93006 lncRNA upstream 1499 10445129 ~ 10484599 (-) False G62829
TU93014 lncRNA upstream 1499 10445129 ~ 10484599 (-) False G62829
TU93028 lncRNA upstream 77029 10520659 ~ 10522487 (-) True G62835
TU93067 lncRNA upstream 252705 10696335 ~ 10698125 (-) True G62861
XR_006251661.1 lncRNA upstream 311759 10755389 ~ 10799963 (-) True LOC122350960
XM_043247531.1 mRNA downstream 43048 10329776 ~ 10338669 (-) False gls2a
XM_043247530.1 mRNA downstream 43048 10329776 ~ 10338669 (-) True gls2a
XM_043247452.1 mRNA downstream 61344 10316425 ~ 10320373 (-) True cpt2
XM_043247453.1 mRNA downstream 61346 10316425 ~ 10320371 (-) False cpt2
XM_043246944.1 mRNA downstream 81411 10298359 ~ 10300306 (-) True tmco1
XM_043246165.1 mRNA upstream 44160 10487790 ~ 10491200 (-) True LOC122349990
XM_043246120.1 mRNA upstream 82717 10526347 ~ 10528717 (-) True LOC122349964
XM_043246124.1 mRNA upstream 85813 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA upstream 85813 10529443 ~ 10533338 (-) True LOC122349966
XM_043246747.1 mRNA upstream 382799 10826429 ~ 10961990 (-) True LOC122350349
TU92747 other downstream 412232 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 420016 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1118891 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1724431 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1731752 8647281 ~ 8649965 (-) True mrps36
unassigned_transcript_1293 other upstream 96589 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 543816 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 653372 11097002 ~ 11131207 (-) False LOC122349915
TU93259 other upstream 880274 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 1118648 11562278 ~ 11564405 (-) False G63095

Expression Profile