RNA id: XR_006251661.1


Basic Information

Item Value
RNA id XR_006251661.1
length 2134
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC122350960
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10755389 ~ 10799963 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGGTGCACGGACAAATAACGGGAACAACGTTTTATACGACTGTTACACGCTCCATTCTTCCATGCCATTCACTTTTTACCACAACCTTGCAAATCTGGGTTTTGTTTCAAGCGCCGAAAGAAAACGTCGAGCACGCAACAACGCGCACGTGCAAGAGCGCGATCGGAAAGGAAGGCGTATCTCCAGCGGCGTTCAGAAAAACGATGTTTCTCACTTGATTGCCAAGCCTTGCGCTTTAGTCATTAGTGCAATACCTCAAAGCAGCAACACGTTTCTTCCCCCTTCTGGATGTGCCCCTCTAGGATTCCAAAAATCTGCAGCGCTCTGAGGCCCAGTGCATCCATGGAAACTCTCCATAAAACACCTGTCAGACCTGCTCCAGTTCAAACACCTGCTGCAGGAATCGCAGTTTACCATCGGGGTTCCAACAGAGCGCCTGGGAATATCAGACAACTGGTCTGTCTAGTCAGTGCAGTCGATGCAGAGATGGGACTGCAGCCGTGAGAGAGGGAAACTCAGCAAAGACGAGCAATTAGGCCTGTGGCAGAAGTCCAGCCACCCCATGCCTCAGTGTGCGGATGTGTTTGAGCCAACGACTGGCTAAAGTTCCTGTAGTGTGTGGATAGGTTGAAAGACTAAATGGACTCAAAGGCAAGCACGTCTTCTCAAGAACTCAGAGGTGGTTTTTGTAGCCGGTGCTTTGATGTGTCTCTTTGTGTGTACCTTTGCCCTCCTTTTGATTGTTCCCTCTCTGCTTTCCTGGATGTAAACACCTACACAAGCTGATGTGTCACATTagtttcaaacaaaaacaagtaaaaaaccTTTTGGTAAAGGCTGGTGGCTCATCTTCTAGGACCCTGAAGAAAGTCTTCACATGCTTACATTCAACCGATTTATCGTACTTTTGATGCTACATGTAAATACTCGCTgttattgatcttttttttttttttcaggtagtTTTCCTTTATGTAGCTTTTCCTGGGGTATATAGGGCTCTGCTCACCATCATCAAAGTTCGATAGCAGCAAGGTTTAGGAGCCAGTTTGGCAGCCTGTCTCCAGCACCAGCCTAACTGGAAAATGAGTAAGATTATGTTtcaagatactttttttttctcatgccTGCACGTCTCCCTTGCTTGCTCATAGGCATTGCTAGGCCATATTTACTGTAGGAGGACATCTTTCATCTCAGACCCTCTAAAAAAGTTGATTTTACTCTGATGtcagcactttttaaaatcagtgaTTATGCAATCTTAATGTTTACTGAGAACAGCTACTGCAGAAAGCTATCTGAGGTTATTTCACTCAGAATCCTCTCCTTATCAGATGTTTGAAACATCCCTGTAGTTTCTGGCGGACATGGTCTAAAGGTGACGTAAGGTGGCAATGCTTAAAGCTGTCACAGGTGTCTCTTGCTTGAATTCTTGTTGCATTGAAATCCGAAAAAAATTAGTAATTTGTGTTCAAAGGGAATTTAGTACAATGGCAGTATAAGTGTCATGATTCTGGTCCACAAATTTCCACAAACTTACCACCAGATATCATTTCCTCACCAAAGTGATTCTTGCACCACACTATTTGTATTTCACTCTGGACTTCAGTTCCCATCATCCATAgcactgatgacacacacatacctgATTGCACTCATCTCACGCTCACCTGCATTCAATGATGCACAAACTGTAAATAACAGTTTCTCTCTCCGCTCCACGGTGAGTATTGATCTGCATTTAGCACTCTCCTAGTGTTAGCTGCCTTGCTgtgccattgttttttttttgttgttgtttttttagtctCCTGTATTGTCTAGCATGTATCGCTCTCCCACTGATAGCTACATTATGAAGCCCTTCCGTTTTACCTCAGTTAAATTTAAAGTCTAGTTTAGTTCCTCTCCTGGATTAtctgtttttgattatttgcCTGTGCGTTTCGGATTAACCCTTGCTGTTCTGACTCTGTCTGCTCCTTGTTTGAATTCACTGCTCCTGTTAACAGATTACCCCTCTTGTCAAGCCCTCTGAATATTGTACGCTGATCGAAGACTCACACATATGCCCTAAGAATACTCTTGTGTCTCGTCCATGCCATACCAGTGTTTGACCCTGCCAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93067 lncRNA downstream 57264 10696335 ~ 10698125 (-) True G62861
TU93028 lncRNA downstream 232902 10520659 ~ 10522487 (-) True G62835
TU93006 lncRNA downstream 270790 10445129 ~ 10484599 (-) False G62829
TU93014 lncRNA downstream 270790 10445129 ~ 10484599 (-) False G62829
TU92986 lncRNA downstream 275338 10440764 ~ 10480051 (-) True G62826
XR_006251671.1 lncRNA upstream 19254 10819217 ~ 10825051 (-) True LOC122351000
TU93215 lncRNA upstream 331707 11131670 ~ 11169473 (-) True smim1
TU93235 lncRNA upstream 397190 11197153 ~ 11205373 (-) True G62974
TU93238 lncRNA upstream 401732 11201695 ~ 11210161 (-) True G62977
TU93256 lncRNA upstream 476396 11276359 ~ 11276914 (-) True G62992
XM_043246124.1 mRNA downstream 222051 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA downstream 222051 10529443 ~ 10533338 (-) True LOC122349966
XM_043246120.1 mRNA downstream 226672 10526347 ~ 10528717 (-) True LOC122349964
XM_043246165.1 mRNA downstream 264189 10487790 ~ 10491200 (-) True LOC122349990
XM_043247530.1 mRNA downstream 416720 10329776 ~ 10338669 (-) True gls2a
XM_043246747.1 mRNA upstream 26466 10826429 ~ 10961990 (-) True LOC122350349
XM_043246750.1 mRNA upstream 164619 10964582 ~ 10968087 (-) True c8h1orf174
XM_043246050.1 mRNA upstream 173342 10973305 ~ 10990735 (-) True cep104
XM_043246052.1 mRNA upstream 296177 11096140 ~ 11131238 (-) False LOC122349915
XM_043246051.1 mRNA upstream 296177 11096140 ~ 11131238 (-) True LOC122349915
unassigned_transcript_1293 other downstream 215098 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 276704 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 363346 10389183 ~ 10392043 (-) True G62760
TU92747 other downstream 785904 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 793688 9954750 ~ 9961701 (-) False mllt1a
TU93206 other upstream 187483 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 297039 11097002 ~ 11131207 (-) False LOC122349915
TU93259 other upstream 523941 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 762315 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 762315 11562278 ~ 11564405 (-) False G63095

Expression Profile