RNA id: TU93386


Basic Information

Item Value
RNA id TU93386
length 3110
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G63075
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11554050 ~ 11557279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttgtgtttaataaaccCTGAATTGTGTAGTATGTTACAGCCACAAAGCATTAAACATGTATACAGTAGTAAGGTCAGTATAACATTCTCTTACAGATCATTGCATGGACAGTACTCCcatcaacagaaaaataatgaattgacccccaaaaaaccccccaaaaaactaaaatcgtCTTTTCCATAACCTCACAGTGAAATTGACCTTTTGCCCACAATATttgattcaattatttaattaaattacttcGCTTGGAAATGTTAGTATTGCATCTGATtagtaattaaatcatttagaaaCCCCATCTTTTCACCAAATACCTTTATGGGAAAATAAATTTTACCTATtcacagcgagagagagaaaaagaaaaaaaacaactacaaaagGTATTAATCAAGTACCAAAAGAACAAGAATAAATAATTCAGCTcataataaactttttaaagtaaatagcTCAAATGTCAAATCTTCTACAACACATtgtagtatattttttattaggaAACCGGcaacctgggaaaaaaaaaaaaaaaaagtaaataatttagtaCACATCTTCGGAGATGACAGATCTGGTGCTTGAGTCTTGTCTCAAGGAAAGCTTTAGCACCTTTTGCCCTGAGTAACAAGCAGGGTAATAACCAGCGCAATTTTCAGTGTAGGAAGCatgaaacaataataaacaagtGACAACGAAGCAGGCTCAAAGAAGCCTGGTGTGTTTCAGGACATTCTAAATGTGAGCTGTGCAAACATTTGACCTCTTCATGTCGATCGTAACAGACAATGTACTACTGAAGTGTCAGAGaagcaaaatattacaaacaatttAAAGGTAATTTGATGCACAGAAGAAAACCTAACATTCCCCCAAAAAAAGggtaattcagtttttaaacaaataatcttATTTAAGAGGTTTCGGCTACAATGAATTTCAAGGGTGTCAGTTGTTAAAGTAATCATTATCTCTTTGCATGTTGGCATCTTAGTTTCTTAAAGCATCGTTTTCCATCTGTACATTCATTGAAGATAACTTAGCAGTAGAGAGACTGGAGTGTATTTGGGTGCAGCGTTAAAGAAGGATCACAGAGGTCAGTTCTTGGTCATGAGGTTTTGCGTCCTTCTCAGAAAGGTGCATTGTTGCTGGTTGATGAATGGTTGCTCTCTTCTCCATTTGATTGCCCCATTACTTTGTACTTTGGGAAAAACATACAATATTGTCATTATCACAAACAGAAATCAACAGTTTTGCaagaaaaaatttattttagcaagaactaaaaaacacactaatcaatggagggaaaaaaaagctccAACCTTCATATTCTCCACCTTGTCCTCAAAGGATTTAAAGCTTGGCGAGTTCCTgacaagatatttaaaaaaataaataaaaacgaagaataaaaaaaactaggtttcaaatatctttttatacatacacacatacatatatacatatgtatatgtgtatgtttgtatgcaACCTAAGAGCTTAACCAaccacacaaaatgaaaaagcatttgcTATCCAtgcagaaaaatagaaaaaaaatctactaatAAACTGTTAATATCACAATGCTGATACTATCTGTCTTTCTGTACCTGTTGTACTTCAATTTTGCTTCTTGTGAAAATATGAAGCTAAAAGACATTTGTATATGGACTTACAAAAGTTCAACCATTCCactaaaattacagtaatattataacTAAGTATTAGCAATTATAATAAGTATTCAGTATTAAGTATTCAAATTTTCCTCAGCATGGAAGAAGACTAAAAGAGATCGGCACATCAGATGAAAGACAGACGGTTCAGATATTAATATGCAGAGGGGAAGGGCTGATACTTTACCTCATAGCTGGCATACTTAAAGAGTGACGCATGGAAAAGTTGCTACTGTAGAGCAGGTTGGTGACAGAGCGAGCAGGGAGAATTAGCCGAGCAGACAGCGTTAGCCAAGCacagagcagacagacagagagagagagagagagagagagaaattgcaGACCACAATGAAAAACTCATTAAAGCATTAGAATATCCAGGATATTTTATCTAACATCTCTATCTCTAACTCTATTAATGACAGCATTAAAGGGTAGATTTTGATACATCGGTTGCTTCACAGGTACCATAGAATGCTCTAGAAATCTTCACAGGTACCAAGAAGACCTCAAAAAGAAGATGGCTGCCATCAGAGCAGGCTCTCGTATAGCTCTTACCCAGAGTTTGAGTACGGCAGAGCCCTGAGCAGCCCGAACGCAGCAGTGTggagaaaagcaataaaagataataaatcaGATAATAGTCTTGATGATATATACAGGACAGGagagagtaaaataaaacaagctgtACAAACACaggatgtaaaataaaatgttagttgccgctacactactgtttaaaagtttggggtcagcagGACTTTTCTATTTAGCACTtcttcagcaaagatgcatgtAGCACAACTGTTGTAACACTGACAATTAAAAGGTTTCATGCACAGTGGCtgagaaatatttcacaattttacattttatcatttttattcaaataaattcagcagtggtgagcaaaagagtgtaaaaatcttactgactccatttttttaacaatagcATATGTATCAGGTTAAATAGTCAGAGAAGCAAAAACAAGTGTATGCCTTGCAAGCATAACCATACGATTTGAAACGTTAGGCAACTTTACAACCTGTTTGTTTGGTGTCAAATCAGAGCAGAATGTCTCATTTTGATAAGCTCTGTTCCATGACATGGTgttcaaaacaagctttttcaCTGCTAAACACTACAGAACCTATGCTACTGCAGCCATCTGGAGATTTCTCATCGTACAAATACTTCCTTATTAAAGCTACTGACAGTCAGTGGTTGTTGGCTATTAGTCCAAgtctgagatatatatatatatatatatatatagaacttCAAATAATCAGAAAAAGGTATGCAGAGAAGGAATATAAAAGTTCACCTCATCTCTCCAAATCGGTTTCGGATGGCAGAGCCCACTGAGGAGAATGCAGCTGATGTCATGTGACCTGCCTGAGAAAGAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93374 lncRNA downstream 8601 11543989 ~ 11545449 (-) True G63068
TU93380 lncRNA downstream 14217 11539511 ~ 11539833 (-) True G63074
TU93379 lncRNA downstream 15751 11538012 ~ 11538299 (-) True G63073
TU93378 lncRNA downstream 17533 11536043 ~ 11536517 (-) True G63072
TU93377 lncRNA downstream 19278 11534549 ~ 11534772 (-) True G63071
TU93388 lncRNA upstream 3708 11560987 ~ 11561559 (-) False G63076
TU93389 lncRNA upstream 3708 11560987 ~ 11561633 (-) True G63076
TU93422 lncRNA upstream 4999 11562278 ~ 11565338 (-) False G63095
TU93423 lncRNA upstream 4999 11562278 ~ 11564405 (-) False G63095
TU93425 lncRNA upstream 4999 11562278 ~ 11615925 (-) True G63095
XM_043246486.1 mRNA downstream 50018 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043247378.1 mRNA downstream 102604 11445273 ~ 11451446 (-) True emilin3a
XM_043246406.1 mRNA downstream 161379 11357175 ~ 11392671 (-) False magixa
XM_043246405.1 mRNA downstream 161382 11351304 ~ 11392668 (-) False magixa
XM_043246480.1 mRNA upstream 12269 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA upstream 12269 11569548 ~ 11575195 (-) True ptk6a
XM_043246446.1 mRNA upstream 21883 11579162 ~ 11615271 (-) True nol4la
XM_043246525.1 mRNA upstream 117995 11675274 ~ 11683625 (-) True gpr173
XM_043246489.1 mRNA upstream 185860 11743139 ~ 11747881 (-) True wasb
TU93259 other downstream 208192 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 422843 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 563346 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 1013759 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 1075365 10440764 ~ 10478685 (-) False G62826
TU93421 other upstream 4999 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 4999 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 4999 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 220992 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 239851 11797130 ~ 11797202 (-) True trnaf-gaa_1

Expression Profile