RNA id: XM_043246585.1



Basic Information


Item Value
RNA id XM_043246585.1
length 957
RNA type mRNA
GC content 0.48
exon number 3
gene id prok1
representative False

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12051357 ~ 12054530 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAGTCCCTGCGGAGGTGTGGGTGGGGGGGAGAGAGGGGCGAggggagataaagagaaagagagatggagaaagaaagagagagacagagtcaGACCTCAGACCTCATTTAAGAAGTTACCAAAGACTCCACACTCTGAGACAGGAGGAAAGGGACAGCCGAGAAAGTGAAGTCATCTCAGGGTCATACTAAATCCTCCAGGAGCTCCACGGCACAGAAGAGAGATAAAagggagaataaaaaaaacacataaaagacCGCTTAAGCTCTTAGTGTCTGTGCCCCGCTGCTGCTATGAGCAGGGTGTTGATTCTGTCCGTGCTCCTGCTGTCCCTGAGCTGGTGCAGATGTGCCGTCATCACAGGGgCATGTGACAGGGATGTGCAGTGCGGAGTGGGGCTGTGCTGTGCtgtgagtctgtggctcagaGGCCTGCGTATGTGCACACCACAGGGGCTGGAAGGAGACGAATGCCACCCGTACAGCCACAAGGTTCCTTTCCCCGGCAAGAGACAACATCACACCTGCCCCTGCCTGCCACATCTGGTGTGCACCAGGTACAACGACAACAGATACCGCTGTACCAGTGACTTCAAAAACATAGACTTTTAACATTGGAAATGTGAGAAAGAGACAAGTGAAGGTGGGGAATACTTGAAAAGGAACAGCACAAGAAGATTAATGACAAGTGCCATAGCACCTTTCTGGTCACGTTCATTTTTCACTGCACTTTGCACTACAAAAATTATCACGGCACCACGGCACGAGGTCTACCTCAGAATCGCTGGTTTACCTTggcattgtaaaaaaacaacgcTAGTTTCATCACCTGTACGTGAGCACACATGCAAACAGGCATTTCGTAAGGAATGTGCTTAGGAGGAAATCGTATTTTCTTCAATATGCTGTGAATTTGTCGAAGgcttaattattgttattaaattattatccGTCTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93798 lncRNA downstream 28665 12022515 ~ 12022753 (-) True G63350
TU93795 lncRNA downstream 31465 12019711 ~ 12019953 (-) True G63347
TU93792 lncRNA downstream 34067 12016726 ~ 12017351 (-) True G63344
TU93738 lncRNA downstream 195356 11855745 ~ 11856062 (-) True G63304
TU93660 lncRNA downstream 228174 11821284 ~ 11823244 (-) True G63254
TU93769 lncRNA upstream 50585 12104578 ~ 12139398 (-) True G63321
TU93764 lncRNA upstream 77498 12131491 ~ 12134728 (-) True G63316
TU93777 lncRNA upstream 105196 12159189 ~ 12198367 (-) True G63329
TU93864 lncRNA upstream 248735 12302728 ~ 12304329 (-) True G63395
TU93874 lncRNA upstream 278463 12332456 ~ 12334605 (-) True G63404
XM_043246544.1 mRNA downstream 38268 12010488 ~ 12013150 (-) True zgc:110353
XM_043246540.1 mRNA downstream 68109 11977200 ~ 11983309 (-) True adora1b
XM_043246465.1 mRNA downstream 76589 11970741 ~ 11974829 (-) True dclre1b
XM_043246571.1 mRNA downstream 160135 11883738 ~ 11891283 (-) False lhfpl5b
XM_043246570.1 mRNA downstream 165913 11883738 ~ 11885505 (-) True lhfpl5b
XM_043246423.1 mRNA upstream 24246 12078239 ~ 12083038 (-) True rbm15
XM_043246535.1 mRNA upstream 31926 12085919 ~ 12091662 (-) True alx3
XM_043246457.1 mRNA upstream 95994 12149987 ~ 12168140 (-) True kcnc4
XM_043246451.1 mRNA upstream 114894 12168887 ~ 12171370 (-) True hspa1b
XM_043246467.1 mRNA upstream 118196 12172189 ~ 12189485 (-) True ahcyl1
unassigned_transcript_1295 other downstream 254216 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 272167 11778271 ~ 11779251 (-) True G63274
TU93421 other downstream 487013 11562278 ~ 11564405 (-) False G63095
TU93842 other upstream 209701 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 297253 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 1755435 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2670215 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2725538 14779531 ~ 14781710 (-) True G64228

Expression Profile