RNA id: TU93864


Basic Information

Item Value
RNA id TU93864
length 1479
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G63395
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12302728 ~ 12304329 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaccattcaaatgtttcaatCAATTCGTTTAcgaattaaaagaaacattacaatattacaacttttttttttgtctgtaatgataaagcatcattacttcaggctaaatttaaaaaaaaacaaaaaaacattcctaTCAATGTTACTGTActgcatatttttgtggaaactgatctATTCTTTTATAGGATTCCTTAAAAACTGCTCATTTtaaagaacagtgtttattgtaaatagaaatattttctaatattttaaatgagacaGGTCCacttaaatgtcacttttgggCATCTGTTGCatcctttcaaaataaatgtattcattaaaaactgtGCTGTATGTAGAAattaaagtgaaagtaaaaatgtgTATCTTACTAAGCAACACAAAACTGACTTCTACCATTCAGAGGTATATGTGTAGATGTGAGCACCTGGTGAGAAAATCCACTCATGAGCACGCTGTTTCGGGCCAGCTCACACATGTCACACGAGCTCAGCTTCCACACCTGAGCAGCGATGCTGTACTCCTCCATCAGCGGCTCCTGaacgatcacacacacacacacacacacacacacacacacactaggtCAAACGCATTACAGACCTAACTCAAGAAATAACAGAtagaattcaaaacattttaatatctcaTGGTATAGTTTGGCTTGTAACCTTTGTGAAGTGGAACTGCAGTGGGTCATCAGTGGACAAAGACACCATGAGGCCCCTGGAAAGGTACTCAGGTAGAGGATTTCGATGGTAACTGAGGAAAAGGCTGTTGTTGCTAAGCGGGGACATGGCGATGCCGATCTGAGCCAGGTAATACAGATACTGCAGCACTGGAGCCTgaggaaaacacacaaacctctCGCTCTAAAAGCTCTGGGTGAAACGATAAGCTCTTGACTGTTTGCAGTGCATGTTAAGATAAGAATATTAGCTCTAAAATATTCAGTGTGAAAAAACATGTTGTTGTTCAGTCAAAATTGTGCACTAAAAGTCAAAGCTGAAGAGAGGATATCAATGTTTGAATGGCTgttgaatatttatgtaaaGGTGTGATATTAATACATACGGAACTGGGCTGATACGAAACAATCATAAAATGTGAACATTCTTTCTGTCTGAGCAGAACAGATGTACAAGCACAGCATTAATTCAGTGGAGGTATGTAGAGTTTCTTTACTTTTCTCAAAAGCAGGCCATGGGAAATATTTTCTGACAGCATAAATCCAGACACAAGGTGGTGAATAGGCCCTGCCTCTCCGCAGTGTGGACGTAGCACAAATGAATTCAAGTTTCTTTGCTGCGCAGGTGGTTGAGTACAGTCATATTCGCATACATGTAGTACAGATAATACGAGTAAGGAGGATTGTCTTCCTCCGTCCAGTTCACAGGTTTTGGACTGTCCAGATTAAAGATGTGATGCTCAGGTTTGGACTCATCATCTACACTGTCAAACCCCACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93777 lncRNA downstream 104361 12159189 ~ 12198367 (-) True G63329
TU93769 lncRNA downstream 163330 12104578 ~ 12139398 (-) True G63321
TU93764 lncRNA downstream 168000 12131491 ~ 12134728 (-) True G63316
TU93808 lncRNA downstream 248198 12053131 ~ 12054530 (-) False prok1
TU93778 lncRNA downstream 249749 12051357 ~ 12052979 (-) True prok1
TU93874 lncRNA upstream 28127 12332456 ~ 12334605 (-) True G63404
TU93877 lncRNA upstream 31437 12335766 ~ 12336021 (-) True G63406
TU93878 lncRNA upstream 31785 12336114 ~ 12336823 (-) True G63407
TU93879 lncRNA upstream 32547 12336876 ~ 12337194 (-) True G63408
TU94000 lncRNA upstream 151719 12456048 ~ 12458857 (-) True G63486
XM_043246541.1 mRNA downstream 20013 12276107 ~ 12282715 (-) True gnat2
XM_043246481.1 mRNA downstream 66990 12228692 ~ 12235738 (-) True amigo1
XM_043246424.1 mRNA downstream 89159 12199611 ~ 12213569 (-) True sort1b
XM_043246526.1 mRNA downstream 105493 12191538 ~ 12197235 (-) False nfyal
XM_043246533.1 mRNA downstream 105494 12190007 ~ 12197234 (-) False nfyal
XM_043246455.1 mRNA upstream 11387 12315716 ~ 12324419 (-) True eps8l3b
XM_043246557.1 mRNA upstream 20456 12324785 ~ 12327978 (-) True atp5pb
XM_043246410.1 mRNA upstream 37831 12342160 ~ 12363089 (-) False kcnq2a
XM_043246408.1 mRNA upstream 37831 12342160 ~ 12363089 (-) True kcnq2a
XM_043246412.1 mRNA upstream 37831 12342160 ~ 12363088 (-) False kcnq2a
TU93842 other downstream 38195 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 505526 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 523477 11778271 ~ 11779251 (-) True G63274
TU93421 other downstream 738323 11562278 ~ 11564405 (-) False G63095
XR_006251575.1 other upstream 46917 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 1505099 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2419879 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2475202 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 2979532 15283861 ~ 15284130 (-) True G64353

Expression Profile