RNA id: TU94134


Basic Information

Item Value
RNA id TU94134
length 531
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G63578
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12648642 ~ 12649214 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAgcatatttgttgtttatttgcacgtttttttcccccaacagtatgttctataaaaatatgtattttgatacaaaaaacaaatgtacattcTGAAAAGGCAATGAAACATAAATGcttgacattttcaaaattccCTGCATATGCAGCTATTGCAGTTATAAAAGGTTGGTGATAGTGATGTAGAGCTGAGTTACAGATCATACGTGCttataaatgcagaaaaacatttaaaaggaggACAAGGGAAGGGAAATAACAGTGACGGGATGATTCGGtcaaactttttcaaaaggaAAGAGATGTTTCTCCTCTCCACGTTTCTCTCGTTTAGTTACGCGCCTTACAATCTTTTCCTCTTGTTCCTCTTGCCTGTTCTGCGGCCACGAACTGGTCAGAGAGGGAGGTCCTTCTTTTTCTTGCTTAAGCCCTGGCTCCGATGCCAGCCCCTGCTGCCCATAGCGACGCTTCAGCCTCTCTTTTATCAGCAGGCCTTTCACCAGTAGTGTCCAGTTGGCCACCACACGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94009 lncRNA downstream 144489 12499758 ~ 12504153 (-) False foxp3a
TU94006 lncRNA downstream 156760 12490277 ~ 12491882 (-) True G63490
TU94000 lncRNA downstream 189785 12456048 ~ 12458857 (-) True G63486
TU93879 lncRNA downstream 311448 12336876 ~ 12337194 (-) True G63408
TU93878 lncRNA downstream 311819 12336114 ~ 12336823 (-) True G63407
TU94135 lncRNA upstream 1069 12650283 ~ 12652814 (-) False G63579
TU94136 lncRNA upstream 2552 12651766 ~ 12652814 (-) True G63579
TU94138 lncRNA upstream 5873 12655087 ~ 12656136 (-) True G63581
TU94139 lncRNA upstream 6494 12655708 ~ 12657144 (-) False G63581
TU94145 lncRNA upstream 15091 12664305 ~ 12670577 (-) True G63585
XM_043246815.1 mRNA downstream 25292 12621092 ~ 12623350 (-) True si:dkey-72l14.3
XM_043246518.1 mRNA downstream 74409 12566263 ~ 12574233 (-) False opn7c
XM_043246517.1 mRNA downstream 75931 12566263 ~ 12572711 (-) True opn7c
XM_043246558.1 mRNA downstream 87176 12544391 ~ 12561466 (-) True efhd2
XM_043246575.1 mRNA downstream 104739 12541668 ~ 12543903 (-) True taf10
XM_043246832.1 mRNA upstream 83000 12732214 ~ 12735194 (-) True LOC122350402
XM_043246844.1 mRNA upstream 154713 12803927 ~ 12806602 (-) True si:dkey-20d21.12
XM_043246799.1 mRNA upstream 241260 12890474 ~ 12919391 (-) True sema3b
XM_043246833.1 mRNA upstream 293476 12942690 ~ 12948591 (-) False tmem51a
XM_043246835.1 mRNA upstream 293476 12942690 ~ 12948151 (-) True tmem51a
XR_006251575.1 other downstream 285547 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 384109 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 851440 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 869391 11778271 ~ 11779251 (-) True G63274
TU93426 other downstream 1084237 11562278 ~ 11564405 (-) False G63095
TU94636 other upstream 1160214 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 2074994 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 2130317 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 2634647 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 3000012 15649226 ~ 15700896 (-) False mvb12bb

Expression Profile