RNA id: XM_043246301.1


Basic Information

Item Value
RNA id XM_043246301.1
length 3887
RNA type mRNA
GC content 0.40
exon number 1
gene id mc3r
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13716628 ~ 13720514 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAAAATACTGAGGGAGTTAAtagaataattagaaaatatgaaaattgtatttatttttttacatctaaATTTGTatctttaatctttttaaagctttggaaatattttgcattacatcacttgctcaccaatggatcctctgcagtgattTAGTTCAAACAGCTGTTAAATACAAtccacaaataattaaaatgacattttgcgaggcaaaaagctgtgtgtttgttataaACAAATTCTTCATTAAGGCATAACTTTAAACTATAGTTTCTGGCCAAATGAGTCCCTAATCCGTAATGACCTTCATTGGAAAATCTATCCCCTGTTGTCGTCTCACATCAAAGTCCACCCACATGTTTGTTCAGATTTGTTTAGAACCGTTTTCATGTGTAAATGGTGCTTGATTACTCTCCTTATTCAGAATAGATGACTTTTTAAATGGGGAAAACAATATAATGGACTCtcaatatattgtttaataacTCAATATAATGGATATTTCTTCCAGACAAAAGCAACAGTTAAATTGATTCATTTCAAACATGCATGCTTTTGGTTCACAAGAAGTTAGTGGCCTGAGGGTTAGTAAATATCCCATAAATTGGTTTTTGCCATTAACTGCAAAGGTTGTTTTCTGCGTACTATTGTATTTGACTTTGCTCAACACAGAGCAACAGCTAcatactgtttttaatattataagtcaaattaaaataacttttcgtTCTTATTAAGACTCTGCAATTATTTGCCACTCATTAGCACAACGTAGTTAAATATAGCACGTTTTACTACTTAAAGATGCTCCAGGCAGATGTATTTGACCCTTCTGAGGTGCTCAGCACCACATTTTAAGATGCTGtgtcaaagtaaaaaaagtttgcCATGCTTTTCAGGACTCTTTAGACGGACGGTGCTTCAACAGCTTTCGTTAACCATCAACACAACGGTAGTAAGAAGGTTAATGTAAAAaggaaacaataataaaacagataaaCTGAATTAGTAATTTGGATCACAGAAAGCACATAACTGCCCGTTGCCATGAACTATGAATGTGTGTGGCtgagcaaacacacaaagaGCAGGCGGAGGCTGCATCTGCTGACGTACAGCCAGCGGCTGTGAGAGAGAGTCCGTTTGCTCTGAGCCTCTGAATCACACAGCATCTCTACAGAAGCATCTCCAACAACCAGAGAAGCAGCACAGCATTTTTGAAGCCAGCATCTGGGGAACTGCAACATCTGATTCGTGAACTACACCTGCAGCTTTCAGATTCCTTCATTGCTATTCATCCCATCATCTGAATCAGTTTTCTCCTCtttctaatattttttctgcttttaaattttctcttttttttcccatcccTCACCTGTTATCTGTTCTTCCccatttattcatcttaaaaAATCCTGATGAACGACTCATATCTGCAGTTCCTTAAAGGACAGAAACCTGCAAACAGCACATCTTTGCCCGCTAATGGCAGCGGGGTCGATTCTCCAGCGGGGGCGCTGTGTGAGCAGGTTCAGATCCAGGCGGAGGTTTTTCTGACTTTGGGTATTGTGAGTCTTCTGGAGAACATCCTCGTCATCGTAGCCGTGGTTAAAAACAAGAACCTTCACTCTCCGATGTATTTTTTCCTGTGCAGCCTGGCTGCCGCAGACATGTTGGTGAGTGTTTCGAACTCTTTGGAGACCATTGTCATTGCCATACTAAGCAGTCGCCTTCTGGTGGCCAGTGACCATTTTGTGCGTTTGATGGACAATGTGTTTGATTCAATGATCTGTATTTCTCTGGTGGCATCAATCTGCAACCTCTTGGCCATTGCCATCGACCGCTACGTCACGATTTTCTACGCCTTACGCTACCACAGCATAGTGACCGTACGCAGAGCGCTGGTGGCCATCGCTGCCATCTGGTTGGTGTGTGTGGTTTGTGGGATTGTCTTCATAGTGTACTCAGAGAGCAAGACCGTGATTGTCTGTCTGATCACAATGTTCTTTGCCATGCTGTTGCTCATGGCCACTCTCTACGTACACATGTTTCTTCTCGCCAGACTTCACGTTCAGAGAATCGCAGCATTGCCCCCAGCGGCGGCCGCCAACCCGACCCCACGTCAACGCAGCTGTATGAAGGGAGCCGTGACCATCTCCATCCTCCTCGGCGTGTTTGTGTGCTGCTGGGCGCCGTTTTTCCTCCACCTCATTCTGCTGGTGTCCTGTCCGCACCACCCGCTCTGCCTCTGCTACATGTCTCACTTCACCACGTACCTGGTCCTCATTATGTGCAACTCTGTGATTGACCCCCTCATCTACGCCTGCCGCAGCCTGGAAATGAGGAAGACCTTTAAGGAGATACTCTGCTGTTTTGGCTGTCAGCCTCCAGTTTAGACGAATGCCTGATTTGAAAAGAGACAAGAAAAGAAACTTGATGTAAGATGCCAAAGCGTGGTGGCCATAATGAGGGAAGATAAGGACAAAAGCAAACACGcagcatttagaaaaaaaggacTGGAAATTTGTGGAACATTATCAAGGATTTGGAAAGCTCAAAAAAATAAGAGAACTGGGAGGAAGATCGAATGTGACCTGTCACTTGCTGAAAGGGTAGATCGGTTATATGTTAGTCATGTTAATTATGTGTATTCATTACGGAGTGGGGTTTGACAGTCTGAAAATCTAGAATTTCAACTCTCATTAAAACCTTTAAATCAATGAACAGTTTTAGGATTTAAGAAAATTTGGTGAAAGACTGATTAACatgaatgtgaaaatgttgaaatgttgcATAATTTGTAAGTTACCATTCAAACCAGTGAATTTGTGACATTGCTCATTTGACTTTTTCAGAAGCCAAATGAGCAATcaatacctaaaaaaaaaacaagattgttACACCTTTggataatttaaatgtatactgAGTCAGTTCAACGCAAACTTGTGGAGATAATGCAAGCTTAAATATTGAAGCCATTAAAGCAAATAGAGAGCaaaccaaataataaaacagatcattagaaaatcattAATTTTGAAATTTCACTTTTCACTCAAATTATTAGGCttataaaacagattaaaattaaaaaagttttacagtttttaaagtttttacttTTAGACCCCGCAGTAGCTGCGACGTATTGAAAATATGTCtagttcatttaatttagttatagtgttttgtttaaagataGTGTCCCGAGCCCTTTTGGTGTGTAAATGCCTCTGTTCAAAGCTGCTGAAGTAGAATCTAACAGTCTATggtaaaacatcaaaaacattgGCGCACTTCCTAggtgactgtctgtctgtctgtctgtctgtctttttgagGTGTcaccaattttgttttttttcatagctGTCAGAATCAAATTCAGCTTGTACTATCTCCAGTTAGCAACGACATTCAGTCAAACTTAGCCCAAAGGCTGCAGTCAGCATGCGTCAATCTTTTAGCTGTCATTCTAAAATTGCTCAGTTTTTGCCTTTCAGTGGTGGAATGTAACTAGGATctcatcatttgtttttttgtcagcagTACAGTTCTACGCAACTGAAATTGCCCtcgttttatttccttttattcagAAGTGGAAAAGATAGAAGTGGACAAGACCAAAAAGATCACAAACCAGGATTTGAACTCAGGTCACCCAAAGCACAACTTCAACCTGTTGTCTCTGACTATCCCTCTTATTCCCTTAAACAGCAACATAGTCTATCTTTTTGCTTGTCTAGAGGTTTAGGTTTGATACTCTGCTTGTTTTGCTGACCTGTTTTTCAAACTGTACTTGCAATCTGTGAACGCTATTATTGCATGAGCTTTAGCACGTGACTTATATCTGTGGACACAATCTCCagcaaatatcta

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004977 melanocortin receptor activity molecular_function

KEGG:

id description
K04201 MC3R; melanocortin 3 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94558 lncRNA downstream 4227 13711155 ~ 13712401 (-) True G63868
TU94559 lncRNA downstream 5260 13711155 ~ 13711368 (-) False G63868
TU94557 lncRNA downstream 16560 13699657 ~ 13700068 (-) True G63867
TU94556 lncRNA downstream 23406 13688178 ~ 13693222 (-) True G63866
XR_006251607.1 lncRNA downstream 34172 13619992 ~ 13682456 (-) True LOC122350567
TU94565 lncRNA upstream 3217 13723731 ~ 13724000 (-) True G63873
TU94566 lncRNA upstream 4555 13725069 ~ 13725474 (-) True G63874
TU94644 lncRNA upstream 277168 13997682 ~ 13997966 (-) True G63941
TU94645 lncRNA upstream 286299 14006813 ~ 14007018 (-) True G63942
TU94647 lncRNA upstream 341983 14062497 ~ 14062740 (-) True G63944
XM_043247173.1 mRNA downstream 75146 13639945 ~ 13641482 (-) True cebpb
XM_043247714.1 mRNA downstream 101290 13608854 ~ 13615338 (-) True adipor1b
XM_043247715.1 mRNA downstream 101296 13608854 ~ 13615332 (-) False adipor1b
XM_043247847.1 mRNA downstream 108351 13599250 ~ 13608277 (-) False LOC122351021
XM_043247848.1 mRNA downstream 108351 13599250 ~ 13608277 (-) True LOC122351021
XM_043246691.1 mRNA upstream 452540 14173054 ~ 14175823 (-) True LOC122350319
XM_043246693.1 mRNA upstream 461018 14181532 ~ 14186141 (-) True LOC122350320
XM_043246692.1 mRNA upstream 461018 14181532 ~ 14186139 (-) False LOC122350320
XM_043246690.1 mRNA upstream 466915 14187429 ~ 14190244 (-) True mpeg1.1
XM_043246031.1 mRNA upstream 473319 14193833 ~ 14194501 (-) True LOC122349900
XR_006251575.1 other downstream 1353533 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 1452095 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 1919426 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 1937377 11778271 ~ 11779251 (-) True G63274
TU93426 other downstream 2152223 11562278 ~ 11564405 (-) False G63095
TU94636 other upstream 88914 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 1003694 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 1059017 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1563347 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 1928712 15649226 ~ 15700896 (-) False mvb12bb

Expression Profile