RNA id: XR_006251563.1


Basic Information

Item Value
RNA id XR_006251563.1
length 1701
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id LOC122350093
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 16407834 ~ 16409696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTTCTCTATTAAAAACGTCGGTGCCAGGCTGGCTCTGGACTCAGAATGGTTTGCGGGTGTTTTTTGGCTCGGGGTAAGATTTTGACAGGTTTGCACTGGTTCCCCCGAGATGCTGACAGAGCTAGATTGTGGCTGCAGGCGGTGGCTCGGCCATCAGCTCCTGACACATCGACAATGTTTGTGTGTAACAAACTTCTTTCACAAGAGAGCTTTTGCAAACATAAGGACGTTGGCATTGCTCACGGGAGTAATCTCAGACGAGAAGACGCTGAACGAAGTCCCACATATCTTTCCATTCCTACAGGGCAGCCAtttcacTTGAGCTGCTGGCTGGAAATACTGGAGTTTTGCCCAGTGACCGCAGATGAAGGAGGAAGTCTAAATATGGTCATTGGTGAGATGAATATATCGTGACATCACAAAACAAGCAGCAGCAACGCTTCCCGCTTCTTCACACAGTCACATTAGAAATGGCTGTTCGGAGCAAATGCTATTATAATTGAAGTTACAGATAAGTTAAGActataattgtaaaattgtaattgttaaataaaggttATTAGAACATGATACATATGTTAACCTATGTAATCGTCTTGTGTTCAGAATCTGGATGAGGCCTTAATAAAGTTATTCTTGTTTTTGAACTGTCAGCTCTCCCATCATATTTAGGAATgtgcatataatattttaacctATAATAGATTGAACTTTAAtatgatgttatgcacagtcTTTGAAACTGAAAGACCTGCCAACAGAACGAGTTGCTAGcacaaactgaaaatataagccaccataatgcattttttttttctcttttttgctttcttGTACTGAGAAACAACAGTTCCGtgattttgaatgtattttttatgtttttatgttttatataagcTGTAAGGGTAGCTTGTCTggcatttttcatgtttatatcTTAACTGTTAACatcaattttattacaaataagcatattttttaataaaatagatttagatTGTTAGACATTGATGGGGTTTTGTTTAGGGGTGGGCTTAAGTAAGAATTGAGAGATATGGTCCTTCTGTTTAGAGCAGACCCaggaaagctttaaaaaaatgtttgaaagttTGTTTTTAGACCACTATATAAGCACTATATGGTGCTGCTAAAACCATAAgcaacattaaaatgcaaaggGTTGTCTGTCTTTGCATTATTCCAGTGCCTcagatatttgaaataataaaaactgttgcaaaaattgtaaaaaaaaatataactgaaCATTAAATATTGCAGTTAATATCAAATCTGGCATTTAtagagttttattaaaatgtacctATTCCCACAACTGGTGCAGAAATattttgagttgatttattGCATTGCAGATTCTTGATGTGTGACAAAATCATGTCTTCATATCTGTGTGTTAGAGCAAAAAGTTTTACTGTGTAGGctataatcataaaaatgctgTACTATAGGACTAATTAttatatacactgtaaatactttatatttatttttatttattcaacataTCCATCCGAATTCCTTTGCATTATTTCTATATTGCACATCTACACATCCAATATTGTGTATTGTTTTCACTTGTTTgtcataataaaaatctttccCATCTGTGCACAGGTAAATTCCTCATGTGTAGAAGCACACTTGGCAATTAAACGCTTTCTGATTTTGATTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95412 lncRNA downstream 22949 16379861 ~ 16384905 (-) True G64508
TU95398 lncRNA downstream 30485 16377114 ~ 16377369 (-) True G64503
TU95397 lncRNA downstream 31257 16373321 ~ 16376597 (-) True G64502
XR_006251654.1 lncRNA downstream 124462 16261537 ~ 16283392 (-) True LOC122350933
TU95376 lncRNA downstream 275042 16131611 ~ 16132812 (-) True G64481
TU95443 lncRNA upstream 50261 16459957 ~ 16460330 (-) True G64531
TU95512 lncRNA upstream 148372 16558068 ~ 16661411 (-) True G64556
TU95543 lncRNA upstream 241862 16651558 ~ 16690514 (-) True G64582
TU95565 lncRNA upstream 273541 16683237 ~ 16683803 (-) True G64599
TU95612 lncRNA upstream 634758 17044454 ~ 17044971 (-) True G64634
XM_043247401.1 mRNA downstream 456 16398576 ~ 16407398 (-) True LOC122350716
XM_043246367.1 mRNA downstream 43910 16353908 ~ 16363944 (-) True setd1bb
XM_043247379.1 mRNA downstream 63360 16313504 ~ 16344494 (-) True LOC122350700
XM_043247395.1 mRNA downstream 215510 16191087 ~ 16192344 (-) True LOC122350711
XM_043248020.1 mRNA downstream 415596 15967534 ~ 15992258 (-) False LOC122351126
XM_043247402.1 mRNA upstream 353601 16763297 ~ 16835560 (-) True LOC122350717
XM_043247728.1 mRNA upstream 636771 17046467 ~ 17096795 (-) False LOC122350945
XM_043247729.1 mRNA upstream 636771 17046467 ~ 17096791 (-) True LOC122350945
XM_043247727.1 mRNA upstream 636771 17046467 ~ 17096790 (-) False LOC122350945
XM_043246317.1 mRNA upstream 949689 17359385 ~ 17361850 (-) False zgc:194007
XR_006251609.1 other downstream 706958 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other downstream 706958 15656919 ~ 15700896 (-) False mvb12bb
TU95181 other downstream 1123724 15283861 ~ 15284130 (-) True G64353
TU95023 other downstream 1626144 14779531 ~ 14781710 (-) True G64228
XR_006251614.1 other downstream 1676463 14724208 ~ 14731391 (-) False slc20a1a
TU95703 other upstream 913364 17323060 ~ 17343739 (-) False LOC122350953
TU95705 other upstream 915348 17325044 ~ 17401228 (-) False LOC122350953
XR_006251564.1 other upstream 949689 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other upstream 949689 17359385 ~ 17361850 (-) False zgc:194007
XR_006251565.1 other upstream 949689 17359385 ~ 17361850 (-) True zgc:194007

Expression Profile