RNA id: TU95712



Basic Information


Item Value
RNA id TU95712
length 1067
lncRNA type sense_over
GC content 0.37
exon number 5
gene id zgc:194007
representative False

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17359385 ~ 17361850 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCATGTCATATGTGAGAAGGAAGTTCAGGGTTTTTCTTCTTGTTGTTTACTTTAGTCAAAGTAACACCTCTGTACTCACAACTACGATGAGAACTGTGCCATAAAAGTCAGaaattgtCGAAGGAGCTCAATCACAAACCTCACGGAGCTGAAGAATGATGGAGAGCGCTGACGTTAAAGTGAAAGTAATTAAGAGACAAAGCAAAGACTATGCTACTAACTtcAATGCCAAACACACGCCGTCGCCAAAAACAGAAGACAGTACGTTAGATGACATAAGATTCAAATGCTGGTGTCATGGTGAATGCCTCTGAATATCTCATGTCCTCTGTGTCACAGAATGAATACGACGGGAGGTTTTACCAAACCAGAGAGCAGAGAGATGCAGTTCAGGATTGGATGAGACGCCACCTGATAAGTCATCTGGAAGAAACTCTGTGAGCTCCATCCAATCATTTGACTCAGGGTACGATTCAAAGAGGTGCACGCGCTTTTTATCCATCTCTGAATTTGATGAATAAACAAGCATAATCATTTATGAACGGCGGTGACCGGCCATGAATTGGTTTGTGATTCAGTCAGTTACACAGTTactgaaatattcaaaacagtTTCTTAATCAATAAACAGCAGCAAAGTGCATTACTCTAAACAGATTAGAAATGATAtccatttatgaataaatatccCTGATGTTTTTCTGTACTAATGGTCAGCTAAGCACTGGGGAcatattgtcatttattattataacattttgcTGTGTGATGTTCATGCAGCAGACTGAAAAGGAATATACTGCTATgacaaatatctaaaaaaagtgcatacagGCATCTAAAGTGAAACAATATAGACCACGCTGCATGTCACACACAAATACCCTTTCGTTGTAAAGAACTGATGTGCTAGAAAAGTATCTGATGTAACTTAttgattgtttttctttaatgtatgtTTTGTCCACTCAGCGTCCAATCATGTGTTTTTGAACAGCttgtgtattttactgtataaaaatgaaatgcatatttaatgcatgcCTAAGTTTGACTAAATTATTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251657.1 lncRNA downstream 15731 17322476 ~ 17343705 (-) True LOC122350953
TU95704 lncRNA downstream 38464 17320376 ~ 17320972 (-) False LOC122350953
TU95610 lncRNA downstream 306114 17046888 ~ 17053322 (-) False LOC122350945
TU95612 lncRNA downstream 314465 17044454 ~ 17044971 (-) True G64634
TU95543 lncRNA downstream 668922 16651558 ~ 16690514 (-) True G64582
XR_006251571.1 lncRNA upstream 319 17362169 ~ 17365510 (-) False LOC122350118
XR_006251569.1 lncRNA upstream 319 17362169 ~ 17365504 (-) False LOC122350118
XR_006251568.1 lncRNA upstream 319 17362169 ~ 17365504 (-) False LOC122350118
XR_006251570.1 lncRNA upstream 319 17362169 ~ 17364982 (-) True LOC122350118
TU95716 lncRNA upstream 324 17362174 ~ 17364135 (-) False LOC122350118
XM_043247728.1 mRNA downstream 262641 17046467 ~ 17096795 (-) False LOC122350945
XM_043247729.1 mRNA downstream 262645 17046467 ~ 17096791 (-) True LOC122350945
XM_043247727.1 mRNA downstream 262646 17046467 ~ 17096790 (-) False LOC122350945
XM_043247402.1 mRNA downstream 523876 16763297 ~ 16835560 (-) True LOC122350717
XM_043247401.1 mRNA downstream 952038 16398576 ~ 16407398 (-) True LOC122350716
XM_043247412.1 mRNA upstream 94292 17456142 ~ 17464579 (-) True rflna
XM_043246070.1 mRNA upstream 178976 17540826 ~ 17543078 (-) True prnpa
XM_043247723.1 mRNA upstream 190670 17552520 ~ 17567609 (-) True rassf2a
XM_043247724.1 mRNA upstream 190670 17552520 ~ 17563121 (-) False rassf2a
XM_043246760.1 mRNA upstream 207570 17569420 ~ 17597847 (-) False slc23a2
TU95703 other downstream 15697 17323060 ~ 17343739 (-) False LOC122350953
TU95424 other downstream 949772 16407834 ~ 16409664 (-) False LOC122350093
XR_006251609.1 other downstream 1658540 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other downstream 1658540 15656919 ~ 15700896 (-) False mvb12bb
TU95181 other downstream 2075306 15283861 ~ 15284130 (-) True G64353
XR_006251590.1 other upstream 745603 18107453 ~ 18112701 (-) False LOC122350290
TU96073 other upstream 793285 18155135 ~ 18157543 (-) True G64967
TU96164 other upstream 1197817 18559667 ~ 18560334 (-) True G65033
TU96415 other upstream 1669137 19030987 ~ 19039551 (-) False LOC122350102
XR_006251696.1 other upstream 1840427 19202277 ~ 19202377 (-) True LOC122351133

Expression Profile