RNA id: TU95939


Basic Information

Item Value
RNA id TU95939
length 538
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G64862
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18390674 ~ 18391211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgcttttattttgtacaaaacCTACATATAGGCGACAGTCAGTTGTTGaggattgattgatttatatatCAAAGTTCTTATGTAgcattagttaaaaaaaaacaaaagcaaacaaaaagcaaacagtGCTCCCATAATCTGAaacaataaattgcatttgaaaatctgaCAGATTAGAATAGTTAATAACTGgagttattattaaaatgcaatgtgaataaaaatgactCCCCAGATAACATGCAATCGTGTCTGCGCCCgaaaacaaaacagcagcagcacttTCAGCTGTGTCACACATTCTCTTCACAGATGAGGACTGCACAAGTAACTAGTGATTCCCAATGTAACAGGCTGACATCTCTGACAGTTGAGCAAACTAAATGAATGATCTGTAGGAAACGTGCGCCACCTGGTGGCTTGAGATGAGATGGGTTTACAGTCTTCAGTTTCTCATATTAGCAACGAAATAAATACATCTGATTTGTTAAAGAGACACTCCAACATCACATCTAGTATGTCTGCGACTCCAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95932 lncRNA upstream 23564 18366570 ~ 18367110 (+) True G64858
TU95928 lncRNA upstream 41891 18347437 ~ 18348783 (+) True G64855
TU95906 lncRNA upstream 103133 18287296 ~ 18287541 (+) True G64841
TU95899 lncRNA upstream 165973 18224397 ~ 18224701 (+) True G64835
XR_006251677.1 lncRNA upstream 232084 18153643 ~ 18158590 (+) True LOC122351024
TU95958 lncRNA downstream 59831 18451042 ~ 18451364 (+) True G64878
TU95963 lncRNA downstream 72680 18463891 ~ 18464547 (+) False adra2b
TU95980 lncRNA downstream 207280 18598491 ~ 18600484 (+) False gpat2
TU95975 lncRNA downstream 225767 18616978 ~ 18618184 (+) True G64889
TU96003 lncRNA downstream 282756 18673967 ~ 18674344 (+) True G64910
XM_043247609.1 mRNA upstream 36408 18349093 ~ 18354266 (+) True orai1a
XM_043247606.1 mRNA upstream 56961 18326458 ~ 18333713 (+) True rnf34a
XM_043247607.1 mRNA upstream 56961 18326458 ~ 18333713 (+) False rnf34a
XM_043247608.1 mRNA upstream 56961 18326458 ~ 18333713 (+) False rnf34a
XM_043247801.1 mRNA upstream 105713 18258221 ~ 18284961 (+) True lrrc75ba
XM_043246239.1 mRNA downstream 16875 18408086 ~ 18417020 (+) True gck
XM_043246238.1 mRNA downstream 20426 18411637 ~ 18417020 (+) False gck
XM_043247440.1 mRNA downstream 27737 18418948 ~ 18423805 (+) True sb:cb288
XM_043247419.1 mRNA downstream 51864 18443075 ~ 18447061 (+) True LOC122350731
XM_043247226.1 mRNA downstream 62365 18453576 ~ 18456539 (+) True dusp2
XR_006251669.1 other upstream 105713 18258220 ~ 18284961 (+) False lrrc75ba
TU95844 other upstream 328326 18056972 ~ 18062348 (+) True LOC122350300
TU95674 other upstream 834326 17555696 ~ 17556348 (+) True G64683
TU95660 other upstream 948527 17441237 ~ 17442147 (+) False ncor2
XR_006251603.1 other upstream 1793452 16495013 ~ 16597222 (+) False LOC122350471
TU95944 other downstream 27754 18418965 ~ 18423794 (+) False sb:cb288
TU95945 other downstream 27754 18418965 ~ 18423794 (+) False sb:cb288
TU96270 other downstream 703736 19094947 ~ 19096071 (+) True G65100
TU96288 other downstream 728733 19119944 ~ 19152305 (+) True G65105
TU96285 other downstream 880890 19272101 ~ 19273742 (+) True pqbp1

Expression Profile