RNA id: TU95980


Basic Information

Item Value
RNA id TU95980
length 1968
lncRNA type sense_over
GC content 0.33
exon number 2
gene id gpat2
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18565699 ~ 18600484 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTCTTTGAGCataaattaaacagttttaaccaTTTAACCACCTACGTGGATGCCGATCGCTTCACTAGAGATGCTTTGTCTTTAATGTATTATCAATCCCGCTGGATTTCTGAGGAATCCTACTCTGCTCAAGACTAGATCCTTGATGTTTTATAAGAGAGGTGCTGCACACCAAATTGTGTTCCAGCTTTATTCAGAAGTCCTGGTTACATGGCATCGATGTGTTTCTGTCAATCTTCTGTAGAGAGCTCATCTGTTGACTTGGTGAGAATGGTGATCCTTACCTTCATTGATCTTGGGGTAAGTGATTCTGTACATCccgatttattatttacacacacacacacacacacacacacacacacacaaatgtgtgtgtatatatacagaggCTGTAAATAAAAGTGCAAGGCCAGAGTAAAGTGTGGTGATACGTAGCAGGTGTTGTAAAAAAGAATGATTAATTCGGCCTCTGGAGACTAAACGGTATTTCTGTTTCTGTGCTTTAGGTGTTGATTGAGGACGGCCAGAGAGAAGATGCGTATCTAGATGTCAGTCCTCTCTTCTCTCAGTGTGCTCACAAAGAGAAACTCTTGCGGTTTTTCAAACAGTTCATGTATAACTGAAAGAGAAAAGTAAGAGATTCAAAGAGAAGTCAGTCTCGGCCGGGAATTATAACAGTAAGCACTTCTGAAATTCTTGTTCTGTTCTTCAGAGTTGTGTAAATCATTAATTATgaatgcttttttgtgtttatacttCTATTTTGCTTAGCGTACTTGCTTTTTATGTGATGCTGAGGTTGCTTTTTTGTTAAGTTTTGTTGTTGAGAGCCCAGAATTGGTTTAGTTAATGGATAGATAATGTTCTCCGTTTATAAAGAGCAGATAAATAAAGAGTGTGCTGTTTGTTACTGTTCTTTTAACTGTAATGAATATGTAACGGGCTTGGTTCAGTATTTAAGTTTCTGATAATTGACCCAGTTGCAGTCTTTCTGTCACGGTTTGATTTATAGTTTAGCCACACAGCGCTGCATATAACTGTTCATATGTATGGTAACATTCTGCATTACATAAACTTTAAGATGATCACATGCATTTTCTTACTATGTATATTCTGCTTCCATTAGCACTGAACAGCAAAATATCATTTACCTGATTCTTGAGACCTGAAACAAAAGGGGTTTTGCTTTTACATTTccatagttttaaaaatagtcCCAGTTGCACTTTAAAATGAGTCTAAGATAATCACGAAAATGTGTATATGGaaagttaaataattatttgcaaaaaaagacgaatacataatatacattatataattctGAACATTATTGCAATATGAAAAGGATCAATACTAATATGTCATATATCTACATtgttattctaaaaaaaaatctaaaattaacaaataaaataataataaaataataataaaccttttaaaataaatgagtataATGAAAGTTTATCtgctaattaattattatatatttttattttatatataaaaatagaaaattaaaaactgctcaataacaaaaaaaatgtttgggatTTTCAGAACACTTTTCATTGATCATGTGACGAAGAGGATggtctttttttgctttttaacacAGCAAGAATTTTCAAAATTTAATAGACagctaaaaaaatttatttagacTACACGATTGTTTTCAAAAGTTATAACCCTGTTTCGatgctgtatttataaatatgtcagATATCTGGCATATTTATGtcttgaaagaaaaacatttttacttgaaaatataaatgaacagcTCCGAACAGTTCCTCTGTGATTCCAGTCCAGTTGAGTTTCAGGAGGTTTTCTCTAAATGGACTATTGATGGGTAATAATCATGACGGATGCTGCAGAGACACGGGCACTGCACTATCACTCCCTGGAAATGACTTTGGCTCTCTATATATACCCATCTCCTGACAGTCTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95963 lncRNA upstream 133944 18463891 ~ 18464547 (+) False adra2b
TU95958 lncRNA upstream 147127 18451042 ~ 18451364 (+) True G64878
TU95939 lncRNA upstream 207280 18390674 ~ 18391211 (+) True G64862
TU95932 lncRNA upstream 231381 18366570 ~ 18367110 (+) True G64858
TU95928 lncRNA upstream 249708 18347437 ~ 18348783 (+) True G64855
TU95975 lncRNA downstream 16494 18616978 ~ 18618184 (+) True G64889
TU96003 lncRNA downstream 73483 18673967 ~ 18674344 (+) True G64910
TU96018 lncRNA downstream 116983 18717467 ~ 18722246 (+) False si:ch211-158d24.2
TU96226 lncRNA downstream 411449 19011933 ~ 19067497 (+) True G65073
TU96227 lncRNA downstream 411449 19011933 ~ 19071520 (+) False G65073
XM_043247224.1 mRNA upstream 133949 18460051 ~ 18464542 (+) True adra2b
XM_043247226.1 mRNA upstream 141952 18453576 ~ 18456539 (+) True dusp2
XM_043247419.1 mRNA upstream 151430 18443075 ~ 18447061 (+) True LOC122350731
XM_043247440.1 mRNA upstream 174686 18418948 ~ 18423805 (+) True sb:cb288
XM_043246239.1 mRNA upstream 181471 18408086 ~ 18417020 (+) True gck
XM_043247762.1 mRNA downstream 8231 18608715 ~ 18614892 (+) True zgc:152830
XM_043247690.1 mRNA downstream 33812 18634296 ~ 18651554 (+) True olfml2a
XM_043247779.1 mRNA downstream 63462 18663946 ~ 18672229 (+) True LOC122350979
XM_043247072.1 mRNA downstream 74835 18675319 ~ 18678826 (+) True arpc5la
XM_043247560.1 mRNA downstream 94970 18695454 ~ 18722246 (+) True si:ch211-158d24.2
TU95944 other upstream 174697 18418965 ~ 18423794 (+) False sb:cb288
TU95945 other upstream 174697 18418965 ~ 18423794 (+) False sb:cb288
XR_006251669.1 other upstream 313530 18258220 ~ 18284961 (+) False lrrc75ba
TU95844 other upstream 536143 18056972 ~ 18062348 (+) True LOC122350300
TU95674 other upstream 1042143 17555696 ~ 17556348 (+) True G64683
TU96270 other downstream 494463 19094947 ~ 19096071 (+) True G65100
TU96288 other downstream 519460 19119944 ~ 19152305 (+) True G65105
TU96285 other downstream 671617 19272101 ~ 19273742 (+) True pqbp1
TU96674 other downstream 1429573 20030057 ~ 20033607 (+) False rfk
TU96852 other downstream 1828535 20429019 ~ 20431387 (+) False LOC122350816

Expression Profile