RNA id: XM_043247560.1


Basic Information

Item Value
RNA id XM_043247560.1
length 4236
RNA type mRNA
GC content 0.47
exon number 6
gene id si:ch211-158d24.2
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18695454 ~ 18722246 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAAACACCTTGCAGTCGGTTCAGAGCCATTGAGAAAAAGGGGGTCTCTCTCGGATATGGTGGAGTAGGCTACATCGGGGCGGCTTGGAAACCACCTGGTTTGGAATAACCCGATGGAAATTGGAGGACGGGGGCCTTGCGAAGTCCGTCTCGAGGAGGTTTTCATGGAGCGTTGAGGTTATTATTATGTGGTGGCTTGCCTTAATGATGTTTACATCTCCGGCTTTCCCATTCATCGTGTTTGTGTGCATGGGGTTATCCGAGGCGGTTCATTCCTACGATGCGCTGCCTTTAGTAATAAGGAAATCTCGTTCAGTCGCCGAAGAGCATCCGAACACGAGCGCGAGCGGGGTTCCGGGGCACCGGCTCGGTATTGTCGCATTAACACCAGCGCCCACGATCGCGTCCGCCAGAAAACCGATAAATGTCGCCGCACCAGCAGCCACCATTAAACCACCACCGACAACGGAGCCCACCACCCCATCTCTGTCTAATCCGAGCTACATGGCCGCGTTTGCTCGGAGGAAGCTCAGCTCCATTGAAACACGGATGAAAGAATCGCAGATGTCTGATAATAAAGCGGACAGATCGGGCGTCGTGCCCGACTTCAGCACAACCTCGGACAAATCCCAAGAGCTGGTGTGTAACTGCAGCGGCGAGGGAGTGTCGGACCCTGACGAGTGTGACCGTGAGACGGGGCAGTGCGACTGCATGCCGGGGTACACCGGGCTGCAGTGTGAAGAGTGTGAGGAAGATCACTTCACCAACGGCACCATCGGCTGCCTGCCCTGCGCGTGTGACTCCTTCGGTGCCGACGGCTCCAGCTGTGACAGCTCAGGGCTGTGTAAGTGTAAGACAGGTGTATACGGGCCCAAGTGTGACGACTGCCACCCTGGATTCTTCCACTTCAGCAGCACAGGATGCCAACCGTGCCAATGCAACAACCACTCGACCTACTGCCACCCTCAGTCAGGTATTTGTTTGGACTGTCAGGACAACGCTCAGGGCCACAACTGTGAGGAGTGTCTGCCCAACTTCTACCGGCGTCACGGTGAGGGGTCCGCGGACGCCTGTCTGCCTTGCCCCTGCTCCTCCGagacctccagcggcagctgccACCTCGATTCCAGTGGACGACCTGTGTGTGACCAATGCAAGTCTGGCTTCTCCGGTCCGGCGTGCAACGCGTGCCCGGACGGTTTATTTAAATCAGCCGGAGCTTGTGTGCCCTGCGACTGTAACGGGAACGCAGACCCTCGCTCCGTGCCTCAGATCTGCCACCCTGAGACTGGCCACTGCCACCGCTGCATCAACCACACAGCGGGAGCACACTGTGAGACCTGCGCTCGGGGACACGCCGGGGACGCCCGCTACCACAACTGCACCCTGAGAGctgtGAGAATCTTCCCGACTCAAGACGTCAAGACCTCCACTACAGAAATCCCCAAATCCACAAGTTCTACTGCTTCCACTCCTGCTTCCCGCCTCCTAACTTCCTCTTCCTCCCCTACCACCCACCCAAGCTTACCGACCCTTCAGTCCGGCACGGGAGACTCCTCAGGACACAACAGCACGGCCTCCGCCCTGACAGTAGTGTCCTGGACGCAGTTTAACATCATCATCCTGGCCGTCATCATCGTGGTCGTCGTTCTCCTCATGGGCTTCGTCGGAGGCGTGTACACGTATCGCGAGTACCGCAATCGGAAACTCAACGCCCCGTTTTGGACCATTGAGCTGAAGGAGGACAACATCAGCTTCAGCAGCTACCACGACAGCATCCCACACGCTGACCCCAGCGGACTATTGGAGGAGGAGCCGTGCGTGGTCGCGGCCAATGGGCAGTTAGCGCTCGCCACGGCCGCCAACATGTACAAAGCGTGAAGTCTTTGATTGTATCTTTTCCTAAAaggatagttcagccaaaaaaaaaaggcattttctcactctcatgtcattccaaacctgacAGCGGGACATAAAAGCAGATATTTTGAAGCACCGCAAGAGTAAAACAATGATGGGCCGATTTTAATAACGCAATTTCAGTTTTGCGCTGGAATGAAACCGAAGGATTGCgattcaaccaaaaatgaaaatgctgtcattaattactcactctcaagttGTTCCCAACCTATAAGACCTTTACTCACCTTCTGatcattttgatgaaatctgagagctttctgaccctgcatagacagcagtGCGACTGACGCGGTAAGGCCCCTaaaggtagtaaagacattgctaaaatagtccatgtgacatcagtagttTAATCTTAACTACGAGAATGCTttttatatgcaaagaaaactaaaataatcgCTCTTTGTTCATTGTCTGTAAATACTGGTTTGAATAAGgctgggcaaaaaaaaaaatggttcatCCTCTCTGTCGAAATCTCCAAACATGTCTAAGATTGATTTATGTCCAGCGTGCTTCTACAAGAGCTCCACGTAGCAGCTTGGTGGCATGCAGTGAAGAAATCGATgaataaagtgtttatttttgttctctttgcacgcaaaaattattcttgtagcttcagaAATTCCAGGTTGAACTGccgatgtcacatggactgttttaattatgtctttactacctttctggacCTAGAATGTGGTAGTTGATTGCCGTCTATGCAGGACCAGAAAGCTCTCCGGTTTCACTGAGATTGTCTTTTTGCGTTCTGAACAGGTTTGGgtcgacatgagggtgaatatctaatgacagaattttcattcatttttcactGTAAAGAACCCAATTTTCGTTTTCTGGTGAACTATCCTGCTAATTTGGTCGATTATTGAAAGAATGCGATCCTGGGAGccaaatatttgtttgattCTACACACTATTTAGCTCCCCATTGCTTCCCGTGTGATATCCTCATGCAAAGAGTTTTCACGTTCAACGTTGCAGAGAGGATTTAAGGAAATACAAGAAAAGCCATTAACATACTCCTTGgacataaaaatgataaaactgcaAATGCATTGCCTCTTATACGAGCCTCTGTGTTAGTTTGGGTTTAAGGATGCTAACCTATATTTAATAGGTACACGAAAGTGGATTCCACTATTTTAGAGGCAACTAAGAGACCTTCGGACTCCAATGCCAAGATAATTTCACATAAAACTGCTGTTTGTATAGAAAACTCACAAGGTTTCAGACTGCCCCATTGCACCGCCTGGGAAATTCACTTTGGCATTGCAATTTTTCAATGGAAATCCGGGGAAGATTAATCAGTTTGCAAGGCTTTTGTAAAGGAAACAAAGACTGCCAGTTTCAAGtcccgcgtgtgtgtgtgtctttgacAGATACTATTTCATACACTTCAGATTTCTTTGGAATGCGGTCTCGCTTTGATTTCCTCTTTATATGATTCCTGTCACGGACTGGTACCAAACTGAACATGCAACATAACAGTCATACCTGTACCACTAGCACCCGTTTCAGCCTTATTGTATTTATGCGCGTGTGGGtggatgtgtatgtgtgtgcatgggcgagcgagagagagagctagaTGGTGGTGTGTGTGGGAACAGTTTCAGATCTAACTGTGTAGAGCTGGATTCTACGCAGGAATGTACAAAAAGACTGGATTGATTCTGCTGCATAGTTTCACGAAAACTGATCAAACGTTCGACACAATATTGTAGACACGAAAGCCATGAAAGCGTAAAAATAACCCAGGAGGAGCGTGTTCAGAGGACTTTGTGAAGTGGAAAGACATTTGTTTTCGGGAACCTATAAGGTACAGCGGTGGacacagtgtgtttttttttcctccatttatCTGCAAGGACCCTTTTAAATGTGATTCAGGATCATTTTGATGATTTGGACAAACGACCGGTGTTTGAATTATTGTgcgtgttttttgttttttttttctattcggATTTGTCTTGTTAATtcctatttatttatcatttgtgtttgtctctgtggtcttattttattgatgtttttcaATCTTCATGCTGCATTGTACAGTGTACCATACCGAACGCAAACTCTGTAGACCGAGTTGTGAGCACAACCTCAAAGATGTGTTGGAAGTCTTCTTTTCtcctctttattttctttctgatttatttagtcAGGTTACATGTTAATAACTCACAGTATACAACGGGATGTCGGtggaaaatactgtattttctcATTCCTGAGTGATcaaatgactgaaattaaagGATTATTGAATCAAA

Function

GO: NA

KEGG:

id description
K24334 MEGF9; multiple epidermal growth factor-like domains protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96003 lncRNA upstream 21110 18673967 ~ 18674344 (+) True G64910
TU95975 lncRNA upstream 77270 18616978 ~ 18618184 (+) True G64889
TU95980 lncRNA upstream 94970 18598491 ~ 18600484 (+) False gpat2
TU95963 lncRNA upstream 230907 18463891 ~ 18464547 (+) False adra2b
TU95958 lncRNA upstream 244090 18451042 ~ 18451364 (+) True G64878
TU96226 lncRNA downstream 289687 19011933 ~ 19067497 (+) True G65073
TU96227 lncRNA downstream 289687 19011933 ~ 19071520 (+) False G65073
TU96229 lncRNA downstream 289687 19011933 ~ 19067497 (+) False G65073
TU96235 lncRNA downstream 289687 19011933 ~ 19078739 (+) False G65073
TU96238 lncRNA downstream 325048 19047294 ~ 19067497 (+) False G65073
XM_043247072.1 mRNA upstream 16628 18675319 ~ 18678826 (+) True arpc5la
XM_043247779.1 mRNA upstream 23225 18663946 ~ 18672229 (+) True LOC122350979
XM_043247690.1 mRNA upstream 43900 18634296 ~ 18651554 (+) True olfml2a
XM_043247762.1 mRNA upstream 80562 18608715 ~ 18614892 (+) True zgc:152830
XM_043247907.1 mRNA upstream 95848 18565699 ~ 18599606 (+) True gpat2
XM_043246069.1 mRNA downstream 3537 18725783 ~ 18729136 (+) True si:ch211-158d24.4
XM_043246074.1 mRNA downstream 39401 18761647 ~ 18941677 (+) True si:dkeyp-14d3.1
XM_043247730.1 mRNA downstream 274223 18996469 ~ 19023292 (+) True glt1d1
XM_043247925.1 mRNA downstream 359351 19081597 ~ 19090260 (+) True LOC122351071
XM_043246260.1 mRNA downstream 378060 19100306 ~ 19103847 (+) True LOC122350065
TU95944 other upstream 271660 18418965 ~ 18423794 (+) False sb:cb288
TU95945 other upstream 271660 18418965 ~ 18423794 (+) False sb:cb288
XR_006251669.1 other upstream 410493 18258220 ~ 18284961 (+) False lrrc75ba
TU95844 other upstream 633106 18056972 ~ 18062348 (+) True LOC122350300
TU95674 other upstream 1139106 17555696 ~ 17556348 (+) True G64683
TU96270 other downstream 372701 19094947 ~ 19096071 (+) True G65100
TU96288 other downstream 397698 19119944 ~ 19152305 (+) True G65105
TU96285 other downstream 549855 19272101 ~ 19273742 (+) True pqbp1
TU96674 other downstream 1307811 20030057 ~ 20033607 (+) False rfk
TU96852 other downstream 1706773 20429019 ~ 20431387 (+) False LOC122350816

Expression Profile