RNA id: TU96324


Basic Information

Item Value
RNA id TU96324
length 637
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G65119
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19405656 ~ 19482043 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcttttttggTTGCCTTTTGTtgcttaaaaatgaagaaacaaaggATAATGAACCAGCAGTTCACAACACAATGTCCGTCATGGAAAGATGAAGACCAATGAAAATTTTAACTTGAAGACCAAACAGCTGAAGAAAcccaaacaaacagaaagacgCTCAAATACCTTTCAAAAAACACCAGAATCTCCTTCAAAACCGGTTTTCGGGAGTCAAGAGCTCATCTAGAGAGGGCGATGGTGTTACAGGTTTTCACTTACCAATAGACCACTGTACATAAAGCTTAGAGCTGGTCTGAAGCTTGCGAAACGCTGAGTGGGTGACTCTAATTGCAGAAGAACACCCCTGCTAAAATACAATACAGTCCAACTGTGAAATCTAACTTCATACAATAGGTGGCCCTCCATGACAGGACTGCCTCTGTTCATTTGGGAAGGGGGTTGTGGGATAAGCGTAGGGATCCAGATGAAGCGGGGTCAGCAGGGGCCACTCCGTGGATCACCGGTGCATGGGCCTCAGGGGCTCTGTGGCTGTGGCAGCATCTGGAAACAGGTTATGGTACGTAGGGAGAGGCACGTAGGCAGCTGTGATCATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96308 lncRNA upstream 35496 19424019 ~ 19425722 (+) True G65111
TU96292 lncRNA upstream 114174 19183690 ~ 19347044 (+) True G65108
TU96237 lncRNA upstream 226618 19068542 ~ 19234600 (+) False G65073
TU96240 lncRNA upstream 227834 19224569 ~ 19233384 (+) True G65074
TU96233 lncRNA upstream 232580 19064493 ~ 19228638 (+) False G65073
TU96539 lncRNA downstream 75501 19557544 ~ 19558486 (+) True G65267
TU96540 lncRNA downstream 76830 19558873 ~ 19559169 (+) True G65268
TU96563 lncRNA downstream 212337 19694380 ~ 19752601 (+) True G65284
TU96577 lncRNA downstream 277427 19759470 ~ 19780752 (+) True G65295
TU96657 lncRNA downstream 458064 19940107 ~ 19940869 (+) True G65361
XM_043246345.1 mRNA upstream 4462 19451487 ~ 19456756 (+) True ren
XM_043246303.1 mRNA upstream 37406 19406564 ~ 19423812 (+) False kdm5c
XM_043246302.1 mRNA upstream 37406 19406567 ~ 19423812 (+) True kdm5c
XM_043246305.1 mRNA upstream 37406 19406568 ~ 19423812 (+) False kdm5c
XM_043246304.1 mRNA upstream 37406 19407239 ~ 19423812 (+) False kdm5c
XM_043247422.1 mRNA downstream 85236 19567279 ~ 19571233 (+) True mapkapk2b
XM_043247731.1 mRNA downstream 90268 19572311 ~ 19577890 (+) True fmodb
XM_043246215.1 mRNA downstream 100269 19582312 ~ 19583244 (+) True LOC122350022
XM_043246216.1 mRNA downstream 107541 19589584 ~ 19590513 (+) True LOC122350024
XM_043246217.1 mRNA downstream 114535 19596578 ~ 19600117 (+) True LOC122350025
TU96285 other upstream 187476 19272101 ~ 19273742 (+) True pqbp1
TU96288 other upstream 308913 19119944 ~ 19152305 (+) True G65105
TU96270 other upstream 365147 19094947 ~ 19096071 (+) True G65100
TU95944 other upstream 1037424 18418965 ~ 18423794 (+) False sb:cb288
TU96674 other downstream 548014 20030057 ~ 20033607 (+) False rfk
TU96852 other downstream 946976 20429019 ~ 20431387 (+) False LOC122350816
XR_006251701.1 other downstream 996149 20478192 ~ 20478298 (+) True LOC122351139
XR_006251702.1 other downstream 999243 20481286 ~ 20481392 (+) True LOC122351140
XR_006251544.1 other downstream 1720405 21202448 ~ 21204346 (+) False ankrd39

Expression Profile