RNA id: TU97066


Basic Information

Item Value
RNA id TU97066
length 2059
lncRNA type sense_over
GC content 0.49
exon number 3
gene id LOC122350560
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20415065 ~ 20421296 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTACGTTAACCtgaatcaacaaaacaaaaaaataagcttCCAAGAAATTTCATGTCATTGTTCCCCTTTATTTTCAGACTTTGAGACACGAATTGCAAGCCTACAGGACTGCatttgcaaatgaaaacaaaacggCAACTTGTCAAAGACGGACGACTGAAGGAGATAGTGAGGGCTTGTAGATCGTGGACAGGAATGTTGCGGTTAGCGGCAGGATTTGTGAAAGGGGTCACTGAGGGGTACTAGACTAAGGTGGAGGTTAGTGGTTGAGGCGTTTACAGCATGCCACAGTCAGCGATGACTATCTTGGCCTTGGGTTTTCCACTACTGGAGCCCAACCCTTCCACCTTCTTGACGACGCCAAGGCCTTCCACGACCTGTCCGAAGACGACATGCTTGCCGTCCAGCCCCATGAAGTAACTTCTGTGCAGATGAAGAACTGGGAGCCGTTAGTGTTGGGGCCAGCGTTGGCCATGGACAAGCAGCCAGGGGAGGTGTGTTTCAGGGTGAAGTTCTCATCCGCAAACTTGTTGCCATAGATGGACTTTCCACCAGTTCCGTTGTGGTTCGTGAAGTCTCCTCCCTGCATCTGGCACATGAAGCCGGGGATGACACGATGGAAGGAGGACCCCTTGTAACCAAAGCCATTCTGACCAGTGCACAACTGCCTGAAGTTCTCTGCAAGACAACAGACAGGCGATGAAGACCAACAGAAATCAAGAGAGACATTAAAAGGACACAAAAAGGTATGGATACCTGCAGTTTTGGGGACAACATCAGCTCTCAGCtgcagaaagaaacaaaagcgTCACATTAAAAGTCCCATTTCAAAGGAAGACTGCATCCTCCAGGTCACATTTGTAGGCTGCATACATTATGCAGATCTCATTTATGAAGCCTACAAAAATGCAGAGGCAGCTTTCCGTTTAAGAGGCGTCCGGGGTGTTTCCGTCAATGACTGATTTGCACCTCAAAGAAAacgttttaacttttaaatggaATACACGGTTGACTTCAAAATTTAGTATGAATTTACGCATGGATTATTCTCCAAGTGTAAACGGACAGAGGAAAACCCCCCCacaaaattgttcaaaatagtattaaaaaaaaggaaacaagacgataaaaaaacaaacaaacctaaaCTATAAACCCTTAAAATCTGTAACTATTTGAACTTGGCATTGATGTGATTTTCCCcgttttagtctttttatttgttttgatttgtttattgcCCTTATATGCCagattgggaaaaaaaaaaaaaaaaaaaaaaaaagttcacgaGGCCACGAGCGTCTCGTCTCCACGTGACCGCGCTGCTGCGGCCTGTTAAACGCTATGCGGAAGACGCGCGCGCACAAAAAGGCACGGAGCAAGCAGCACATCGCGTGCATCTACGCTCGGCGCTCCCGTGAACGCACGCGGTGGCGCGTCTCTCCGAGGGCGCGGAAGAAACCCCGAGCACGCGAGCCTGACGCTTACAATTTTTTTCCAAACGTAACCAAAATGGCCAccgatcttttttttttttttttttccccccaaacacCCTCACTTAGCGCCGCGTTCCTCAAATATCCTCATTTAAAATGAGCCTTAATACTCAAGACGGGACACCCGGCGGCAGTCACGAGAGGCCGGGTCCGGCGGCTCGTAACGGGATCTCCGCATGCCCTCTCCCCATCGGCCGAAGTTTCCAGAACCTCCGGACGCGCGAGCCTGCGACTTTAAATAGCCGCGCCGAAACGCTTTGTAGCGAGCGCCTGCGTCTCGGTGGAGCGTGAACCTGAAGTTTTGGCGAGAGTAAAACAAACCAGCCTACGGGGAATCCGGGTTAAACAAAGGAGCAGCGGCCCCTGCCCATTCGCGCACTCCCGCCTGGCACTTCCGCGTAGTTTTCCACCCAAACCAGCCTCCAAGTCTTTGTGCGGATGCTCCTCGTACGAGAAACCGATTCCGGCAGCAGACTCTGTCGGCGAGTCGcgagaatgaataaaaaaaaccgCTCAACTTCCAGTCAACGCGGCCTAGCTGCGACACCGAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97028 lncRNA downstream 130225 20281582 ~ 20284840 (-) True LOC122350542
TU97029 lncRNA downstream 130225 20283530 ~ 20284840 (-) False LOC122350542
XR_006251606.1 lncRNA downstream 130874 20282169 ~ 20284191 (-) False LOC122350542
TU97011 lncRNA downstream 248693 20166056 ~ 20166372 (-) True G65613
TU97001 lncRNA downstream 274865 20138116 ~ 20140200 (-) False LOC122350956
TU97106 lncRNA upstream 46689 20464551 ~ 20464756 (-) True G65682
TU97116 lncRNA upstream 73987 20491849 ~ 20505902 (-) False LOC122349883
TU97115 lncRNA upstream 75777 20493639 ~ 20497313 (-) False LOC122349883
XR_006251536.1 lncRNA upstream 76624 20494486 ~ 20505973 (-) False LOC122349883
XR_006251535.1 lncRNA upstream 79633 20497495 ~ 20505973 (-) True LOC122349883
XM_043247576.1 mRNA downstream 54895 20356650 ~ 20360170 (-) False LOC122350835
XM_043247573.1 mRNA downstream 55039 20356650 ~ 20360026 (-) True LOC122350835
XM_043247571.1 mRNA downstream 58538 20352522 ~ 20356527 (-) True LOC122350834
XM_043247572.1 mRNA downstream 58540 20352522 ~ 20356525 (-) False LOC122350834
XM_043247184.1 mRNA downstream 145649 20266843 ~ 20269416 (-) False lsm1
XM_043247209.1 mRNA upstream 21400 20439262 ~ 20441908 (-) True mak16
XM_043247020.1 mRNA upstream 36768 20454630 ~ 20459028 (-) True ywhabb
XM_043247019.1 mRNA upstream 42267 20460129 ~ 20464209 (-) True LOC122350494
XM_043247372.1 mRNA upstream 48036 20465898 ~ 20468905 (-) True chmp4bb
XM_043247883.1 mRNA upstream 174603 20592465 ~ 20614297 (-) True adgrd2
TU96506 other downstream 981930 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 981930 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 1212688 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 1375514 19030987 ~ 19039551 (-) False LOC122350102
TU96164 other downstream 1854731 18559667 ~ 18560334 (-) True G65033
XR_006251697.1 other upstream 35169 20453031 ~ 20453131 (-) True LOC122351134
TU97752 other upstream 1353606 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 1366842 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 1596111 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 1610870 22028732 ~ 22031993 (-) True G66116

Expression Profile