RNA id: TU97173


Basic Information

Item Value
RNA id TU97173
length 4020
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G65728
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20886224 ~ 20892629 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAATAATGTTAATGCAGCATACACAAAAAAAGCTGgcattttgagtgtttttttttgttaaacacacGCTGGCCtaaatttaatttctgatcCGATTTTCCTAAAAGCGTGTCTGAGAATTCATGCTACGATGattttaataatagcaataGCAGAAGTAGCAGCAGATTTAGCgcaaaagcaaaaagcaaagcagaagAGAATTGTGCATCTCTGCGCATATTCAGAAAGCGTGCATCATGATTTATCAGGCGTAATCAAAGCTCACCAGCTTGGTAGTCGTACAGAGCCCTGGCGCAGACGCCGCGGTCATCGGTCGTCTCGTACGTGTTCTGCTCCTCCACCTGACGAACATTCAAGAACCGgcacaaacaaatcaaacacacctcACTCACATCCCCGAAACAcagcagtaaataaaaaaatagatgtcATGACGTGAAAAGTTTGTGGCTTATGGTTCATATGAGTCTGAGCTCATCCGGcacatgatataaaaaaaacaagcaaaacgaGTTCCTAAAAATACAAGCATTTAAAATCTTTCACTTCTAGAAAAACAGACGAAGAATGAGTACGCAGACCGCCGTTTAATTAAAAGCTCTTAAGGGATGACTGCTTAGCTCTGTACCTGTGCTGGATCCTCGTAGATGGCGTCTTGTTCCACTACCGAATCATACTGTGGCTGCTTTTGTTCTACGGGAATCTCGTAATTGTCAGCGACCGCTTCTATATCTGTGGAATGAAAGAGAGCGTGATGAGAGAAATCGTTTGCTACGCTTCCTGTAACGGCACACAGTCCCCACAAGGTGGCGCTGACAATCAGTTATtggctgatgatgatgatgatgatgatgatgataacgtGACGTGAGCTGGGGTAAAGGAACACAGATGACCGGAGctgataatgtgtgtgtgtgtgtgtgtggatcccACCTTCATACTCTGGCTCGGGTTCTGGCTCTGGCTCCACATAATGAGATCGGGGTTGCTCTTCAACACTGGGTTctactcaaaacacacacacacacacatgcgtggAAACACACGGACACAGCGTGCATGGTAAAAAGAATCATATTCTAATGGCTAGAGTCAGAGTTTGAGAGCTGCGTGACCAAACTgtatcatcatttttttatatgatggTCACCACAATTTAGCGAACTCCAccctaaaatattaaatgattcattgatgaatcatgttttattaaaaggcTGCACTAAATACTTCAAATacttacaaaaaaatcattacatgCTTTGATTTTTACTTTCGATGGTGGTGCAAATACATCATCAGTGCAAAAGCTTCGAattatttcaaagaaacaactaaaaaaggtataaaaatgGCAATACATTATGAATCTGAATGTAGCAGCTCCATGTAAAGTAGGCTATACAGTAGTGCAGTATAAATGGGGcagtatatagaaatatatacgtGGCATATaaattactgttcaaaagttctgggtaagtttttttttttttccctgaaagaaatcaatacttttacTTTAAACCGACCGCAACTTTTAAATCGTTAcgaaaatgttcaaataattgATAAATTCCACAAACAACtgattttaactgtaaataataacGGTTATATTTCttgcatcaaatcagcatattagaatgatttttgtaagatcacgtgacactcaAGACTGAAAAATCCATAACAAAAAAACCTATTccaatagaaaacaattattttaagttCATTCAAATTGTAACAATTTTAgaactacttttttattttagctttgatAAATGCAGGCTTGACTGTCATTAAGAGATTTacaagtcttaaaaaaaaaagaatctaatcccaaacctttgaacagtagcgTAGCATCATAACGCTCAGGCCTTATCTTGAGCTGATTAATtcattaaagagacagttcaccgaAACATTCTGTGCTATTCtattcatttactcactctcaaacCTGTACGACTGTCTTTAGTCAGTGTAACATAAAAGGAGAAGACCAAAATAACAAAGACGCGCAATGAAAGCATCATAACAATGGTCTATTTGACTTCAAGAAAGCAGCAATGCCCTTCTCACGAACAAATGATTCTTTCAGCCGAATGATCTTACGGTGCAtatacagtcatggccaaaaatattagcacccttggtaaatatgataaAGTGGCTGTAAAAATTAATCTGCAAAatccttttaaacaaaaagacaaaaatctaAGCTTTAATTGGGTAATAAGAATTTCCgttatcttttgctgcacattagaaatatattctttggtttttctcattgtgatggATGATTAATTGAATTTGGGCTTTCCCCTcctattaatatttctgtaaaacagGAAGCTATGGCTGgataatttttagatttataaatTACCCTGGAGTGCTCAAAACTGTGAATGAATTGGAATATACTTCAGACATATTTTACTTATAAGAAtttctaggggtgccaataattgtgtccaacGTGCATGtaagaaaattaatttcatcATGATACGTCCTCCCAAGTTTTAATTCTTAGTGTCCAATGAAAGGTCAGATTtttgagaacattttaaatagaaagtcaaaaggattaacaaggcagattaattttcacagccttctttgtcGCATAATTACCAAGGGTGCCGAGATGTTTagccattatatatatatatatatatatatatatacacatccctcatgaaatttttttaatttttaggtgaactgctcctttaagtgcacaaagcaaacaaagtgctcactcacacacagcaaACAACATCCTGGAAATCCCGTTTGTTTAGAGGTGTACGTCAGAATTTGACAGCAAGCATGTTAGTTGAGACGCATGAAAACACCACACAAAGCCGCAGAGAGTGAAAGTGTGCGTGAGAGAGCATGGAGATGGACGACACACCAAACCTTTCCAAGGGCGAGATAAGGAAGGAACGATAAGGTGCGTGTTTGTGTACCTCTGGCTCGTAAAGGTGAGGCCTGACGCACGGGAGAGCGAAATGGCTCTGGGTCACATGACTGCTTGGACAGAAAAGGGCTGTTCAACCgccctgagacacacagaacagagAAGGACAAAGAGAGAAACCCAAGCTGACAGATGGCTGACGGAGTTATACACAGCAGAACAGACCACAAACATCGTTTTAGACAGGAGATCTGCAGGCTGTTTAATGACAGCGTCGGATTTCAGACGGACGGACAGGGTTGAAATGGCCGGAGAACAATGGGACAATGGGAAATACCACGAAACACAGAACAATCAGGAGTTAGTTACTGCATGCAATGCATAAGAAAACACCTTCCAATTCACAGACAAGGCCATTCTTTGAACGTGTTTCAACTCATTCGCTACGTGAAACGTGACCCACATAGAAAAGGGGGAAGCTAAATACAGCATGCAAATAATgtggcatttaaataaaacacttcctATGGTGTAAACTGTGCTTGTAGAGATCTTATCAGGACATCAGCGTAGTGATAATGTGCACATCTGGGATTAGAACATATTTGCTATTCATTATCCCATTGAGATATAAaccttggtgtgtgtgtgtgtgtttgtgtaatatatatacacacacacacacacacacacacacacacacactttattcagcaatgatgcattacattttatgaaaagtgacagtgaagtaATGGCTACACTGTTTGAATTTAGCTTTGccattataatataaatttatattttaaattgtgataacaTCATATTTCAATAACATGTTTGCCCACCAAAGCTGCAATCACCAGCAGAAGAATAGTGAACGGACACTTGAAAACAAAGCCTCCTAAACACTGTGCATGCGCTGATTCTGAATGCATCTCTTACATAGGCTGACaaagaaataaactttaaagACTTGTGCACTCAATTGTTTACTGAAATGAAGCTTTGTGCTCGTGTATCCTACCTCACTCACAAATCAAAATATTCCATAATATTCTCATATTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97177 lncRNA downstream 4791 20881022 ~ 20881433 (-) True G65732
TU97154 lncRNA downstream 160770 20723266 ~ 20725454 (-) True G65717
TU97155 lncRNA downstream 164414 20718940 ~ 20721810 (-) False LOC122350336
TU97135 lncRNA downstream 275301 20610562 ~ 20610923 (-) False G65704
TU97200 lncRNA upstream 36258 20926611 ~ 20926980 (-) True G65750
TU97202 lncRNA upstream 37909 20928262 ~ 20928477 (-) True G65752
TU97213 lncRNA upstream 58845 20949198 ~ 20951698 (-) True G65759
TU97226 lncRNA upstream 66581 20956934 ~ 20957958 (-) True G65764
TU97275 lncRNA upstream 118622 21008975 ~ 21012134 (-) True G65792
XM_043247600.1 mRNA downstream 64172 20772439 ~ 20822052 (-) False tcf7l1b
XM_043247601.1 mRNA downstream 64172 20772442 ~ 20822052 (-) False tcf7l1b
XM_043247598.1 mRNA downstream 64173 20771693 ~ 20822051 (-) True tcf7l1b
XM_043247599.1 mRNA downstream 64957 20771693 ~ 20821267 (-) False tcf7l1b
XM_043247158.1 mRNA downstream 123737 20757808 ~ 20762487 (-) True tgoln2
XM_043247354.1 mRNA upstream 26675 20917028 ~ 20919100 (-) True LOC122350675
XM_043246857.1 mRNA upstream 41597 20931950 ~ 20943305 (-) False LOC122350417
XM_043246859.1 mRNA upstream 41597 20931950 ~ 20943304 (-) False LOC122350417
XM_043246858.1 mRNA upstream 41597 20931950 ~ 20943304 (-) True LOC122350417
XM_043246089.1 mRNA upstream 124640 21014993 ~ 21025831 (-) True gna14a
XR_006251697.1 other downstream 433093 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 1453089 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 1453089 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 1683847 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 1846673 19030987 ~ 19039551 (-) False LOC122350102
TU97752 other upstream 881115 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 894351 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 1123620 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 1138379 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 1174545 22064898 ~ 22068757 (-) False LOC122350973

Expression Profile