RNA id: TU97633


Basic Information

Item Value
RNA id TU97633
length 2153
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G65998
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22010649 ~ 22243293 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaccTCTTTTCATCATAACGGTGAATcctatacatacacacacacacatccaaaaCACATTACGAGATGCTTGAACCTCAAACATTGATTAAGGCCTTGATGCCGGACATCCCTTAGCTGGATGTGGATGGCAGAACTaatctaaactaaaaaaattaaaaaataactaccTACCACACAAACCGTTAAGATGAAATGATAGCTACATTTAGGATGCCATTGAAAACTTAAAAGCAAAGTAGTTCAGTGCTCCACTGACCAAAGAGCAATATTTAAAACCCTTTCCATGAGTTGCATAACTTAAACACTTCCAAAATATATGAACAGGACTATATTCATACCTTCATAGCCATTGCCCTGTAAGACCCTTCTTCAACCTTTGGTTACATGCCATcaataagatatttttggttCACACCCATCTAGTGCTTTGAACAAAAGATTCAGATGATAgaaatttttattcatgttgattttatgcacaacaaaaagtaagaaatttaaaaaaaagtcacaatattCGGATCAAAGGAAGTACATAAACgttttaattgcaaataatgtagtatataaaatataacccTTTTATACccaataaaactaaaagatagataaagacaaaaaaacaaaacaaacaaaatggtcCCATGGAAACAATGGTAACGGTCGGTGGCGTTGTACGGGGCAGGCTTTATGTAACACTACACTCATTTGGCAGAGACACTCCGTAACAAGGCCTCGGAACATTAAAGAAGAAAGGAATCGAAGAACGGAAGCCAAAAGaattcatgcatatatttatagtacGCAAGCGTACCATCGGATGAGTCTCAGTAACCGATTTTTATAAATACGATACTCTTACAGTAACTACAGGCACAGAAATTCACTACCATGCTGCAATAATCAAACATCTCTCTCTATTcatgtaaacatttcatttcgAAACAGTTGGCGTTTACCATACCAGTAGATCTCCTCGTGCTACATCCAATTTGGCAAAAGCACACAAACTTCACTAAAAGCATGATCAGATAATACATTCACTTCATATTTGACCCTTCATGTAGTTGACCGGGATTGTCGTCATTCAATATGACCGcaactttaatattttcagCTGAAAGCAAATCACACCGTTTATCTATCATtagttatttgcatttatttataactagGTTCATTTTGAATTGATAAATACACTATCAATTGTTCGCACGTGCTTATTATCGTTTTAAAcctctaaaataataaaagcattgatCCACATTGTAAACTATCACCctaacaatattataaatgattaaagtcTCAAAGCAATGTATTGAGAAGACTTTACTCTTTACTCTAGTAAACATCTGCATTTCAGTGAATACCAATTTGAATAAAAGAGTCATTGTCTCAAAGTCTTACAGGCCACAGAAGCTCAGCTATGGAAATATCCCTGGATATGAAACTCCAGAAGATTGAAAGtcataacaggaaaaaaaatgaaatcatcaGTAACAACTAGATCCCCTTAAATAGCAGCAAACTGGATAAACAATGTATTGTGCAAACtaccaaaaaaacactgattcacagttgtgttttagtgccacatCTTGCTAGAATcaggtttttttccccataagGAGAACAGCTAATGGAGAGATATCAGGCTCGTGTCACTTAACTTTGCTACACAAGTGCTTGTGTATTTGATGAGAGTCATCTGGAAGTCTCTCTGGGTCAAACTAATATTTCAAACAGAGcaaactaacaataaaaagcCATAAGATAAAGGTGTTAAAGGCCGCATCAAGTGACATCTGAGTTACGAGTGCAGCTCTTATTCCGCCACCCCATACTACGCCaccacaagaaaaaaacaaaaacaaatatcacATTCCAGTTAACAGCAACGATATGAAACTTCCAGAATCATGCTCGGAGACAAGATACAAGTATATGGAGGTACAATTCAGGTTCTTTAGAATCAAGAAAGCTGGCATGTGTAAACCCCTCTCTTAAATTGTCTTCGATAGTctgtagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgatTAGGAAGCGATTACTCAACAGTCACAGACTTGGCCAGGTTTCTTGGGCAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97620 lncRNA upstream 48804 21951413 ~ 21961845 (+) True G65995
TU97616 lncRNA upstream 52903 21953779 ~ 21957746 (+) False G65995
TU97562 lncRNA upstream 265431 21744834 ~ 21745218 (+) True G65959
TU97561 lncRNA upstream 265970 21744475 ~ 21744679 (+) True G65958
TU97560 lncRNA upstream 266272 21744089 ~ 21744377 (+) True G65957
TU97672 lncRNA downstream 40441 22283734 ~ 22285432 (+) True G66022
TU97674 lncRNA downstream 45015 22288308 ~ 22288847 (+) True G66024
TU97902 lncRNA downstream 268886 22512179 ~ 22513245 (+) False G66183
TU97903 lncRNA downstream 268886 22512179 ~ 22513245 (+) True G66183
TU97910 lncRNA downstream 286960 22530253 ~ 22531750 (+) True G66189
XM_043247425.1 mRNA upstream 3493 21965074 ~ 22007156 (+) True LOC122350739
XM_043247466.1 mRNA upstream 46086 21963465 ~ 21964563 (+) True LOC122350768
XM_043247858.1 mRNA upstream 50750 21950079 ~ 21959899 (+) True LOC122351030
XM_043247857.1 mRNA upstream 50750 21957781 ~ 21959899 (+) True LOC122351029
XM_043246220.1 mRNA upstream 62086 21944819 ~ 21948563 (+) True si:ch211-198o12.4
XM_043246622.1 mRNA downstream 47458 22290751 ~ 22318814 (+) False agtpbp1
XM_043246623.1 mRNA downstream 48045 22291338 ~ 22318814 (+) False agtpbp1
XM_043246621.1 mRNA downstream 49272 22292565 ~ 22318814 (+) False agtpbp1
XM_043246620.1 mRNA downstream 49273 22292566 ~ 22318814 (+) True agtpbp1
XM_043246625.1 mRNA downstream 51147 22294440 ~ 22318814 (+) False agtpbp1
TU97627 other upstream 46091 21963514 ~ 21964558 (+) False LOC122350768
TU97622 other upstream 48804 21951413 ~ 21961845 (+) False G65995
TU97624 other upstream 48804 21951413 ~ 21961845 (+) False G65995
TU97614 other upstream 48804 21953757 ~ 21961845 (+) False G65995
TU97619 other upstream 56964 21951413 ~ 21953685 (+) False G65995
TU98063 other downstream 740747 22984040 ~ 22985584 (+) False mfn2
TU98168 other downstream 811333 23054626 ~ 23151947 (+) False prdm16
TU98282 other downstream 1389090 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 1509275 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 1510168 23753461 ~ 23783631 (+) False acot7

Expression Profile