RNA id: TU97789


Basic Information

Item Value
RNA id TU97789
length 2172
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G66115
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22010643 ~ 22013678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCTGTCCTTCCACCTCGCTGTGCTCCGCGGATATGACGTTGATTGCCCAAGAAACCTGGCCAAGTCTGTGACTGTTGAGTAATCGCTTCCTAatcgaaacacacacacacacacacacacacacactcactacagACTATCGAAGACAATTTAAGAGAGGGGTTTACACATGCCAGCTTTCTTGATTCTAAAGAACCTGAATTGTACCTCCATATACTTGTATCTTGTCTCCGAGCATGATTCTGGAAGTTTCATATCGTTGCTGTTAACTGGAATgtgatatttgtttttgtttttttcttgtggtGGCGTAGTATGGGGTGGCGGAATAAGAGCTGCACTCGTAACTCAGATGTCACTTGATGCGGCCTTTAACACCTTTATCTTATGgctttttattgttagtttgCTCTGTTTGAAATATTAGTTTGACCCAGAGAGACTTCCAGATGACTCTCATCAAATACACAAGCACTTGTGTAGCAAAGTTAAGTGACACGAGCCTGATATCTCTCCATTAGCTGTTCTCcttatggggaaaaaaacctgATTCTAGCAAGatgtggcactaaaacacaactgtgaatcagtgtttttttggtaGTTTGCACAATACATTGTTTATCCAGTTTGCTGCTATTTAAGGGGATCTAGTTGTTACtgatgatttcattttttttcctgttatgaCTTTCAATCTTCTGGAGTTTCATATCCAGGGATATTTCCATAGCTGAGCTTCTGTGGCCTGTAAGACTTTGAGACAATGACTCTTTTATTCAAATTGGTATTCACTGAAATGCAGATGTTTACTAGAGTAAAGAGTAAAGTCTTCTCAATACATTGCTTTGAgactttaatcatttataatattgttagGGTGATAGTTTACAATGTGGatcaatgcttttattattttagaggTTTAAAACGATAATAAGCACGTGCGAACAATTGATAGTGTATTTATCAATTCAAAATGAACctagttataaataaatgcaaataactaATGATAGATAAACGGTGTGATTTGCTTTCAGctgaaaatattaaagttgCGGTCATATTGAATGACGACAATCCCGGTCAACTACATGAAGGGTCAAATATGAAGTGAATGTATTATCTGATCATGCTTTTAGTGAAGTTTGTGTGCTTTTGCCAAATTGGATGTAGCACGAGGAGATCTACTGGTATGGTAAACGCCAACTGTTTcgaaatgaaatgtttacatgAATAGAGAGAGATGTTTGATTATTGCAGCATGGTAGTGAATTTCTGTGCCTGTAGTTACTGTAAGAGTATCGTATTTATAAAAATCGGTTACTGAGACTCATCCGATGGTACGCTTGCgtactataaatatatgcatgaattCTTTTGGCTTCCGTTCTTCGATTCCTTTCTTCTTTAATGTTCCGAGGCCTTGTTACGGAGTGTCTCTGCCAAATGAGTGTAGTGTTACATAAAGCCTGCCCCGTACAACGCCACCGACCGTTACCATTGTTTCCATGGgaccattttgtttgttttgtttttttgtctttatctatcttttagttttattggGTATAAAAgggttatattttatatactacattatttgcaattaaaacGTTTATGTACTTCCTTTGATCCGaatattgtgacttttttttaaatttcttactttttgttgtgcataaaatcaacatgaataaaaatttcTATCATCTGAATCTTTTGTTCAAAGCACTAGATGGGTGTGaaccaaaaatatcttattgATGGCATGTAACCAAAGGTTGAAGAAGGGTCTTACAGGGCAATGGCTATGAAGGTATGAATATAGTCCTGTTCATATATTTTGGAAGTGTTTAAGTTATGCAACTCATGGAAAGGGTTTTAAATATTGCTCTTTGGTCAGTGGAGCACTGAACTACTTTGCTTTTAAGTTTTCAATGGCATCCTAAATGTAGCTATCATTTCATCTTAACGGTTTGTGTGGTAggtagttattttttaatttttttagtttagattAGTTCTGCCATCCACATCCAGCTAAGGGATGTCCGGCATCAAGGCCTTAATCAATGTTTGAGGTTCAAGCATCTCGTAATGTGttttggatgtgtgtgtgtgtatgtataggATTCACCGTTATGATGAAAAGAggtaataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97735 lncRNA downstream 257028 21751768 ~ 21753615 (-) True G66071
TU97707 lncRNA downstream 365960 21571117 ~ 21644683 (-) True G66046
TU97708 lncRNA downstream 372295 21603675 ~ 21638348 (-) True G66047
TU97710 lncRNA downstream 372295 21631309 ~ 21638348 (-) False G66047
TU97458 lncRNA downstream 636052 21373243 ~ 21374591 (-) True G65871
TU97806 lncRNA upstream 51220 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA upstream 51220 22064898 ~ 22068757 (-) False LOC122350973
XR_006251666.1 lncRNA upstream 60009 22073687 ~ 22074471 (-) True LOC122350974
TU97817 lncRNA upstream 279761 22293439 ~ 22295953 (-) True G66131
TU97838 lncRNA upstream 351223 22364901 ~ 22365113 (-) True G66143
XM_043247261.1 mRNA downstream 67226 21923712 ~ 21943417 (-) False kansl3
XM_043247262.1 mRNA downstream 67226 21923712 ~ 21943417 (-) False kansl3
XM_043247259.1 mRNA downstream 67226 21923712 ~ 21943417 (-) True kansl3
XM_043247263.1 mRNA downstream 67227 21923712 ~ 21943416 (-) False kansl3
XM_043247264.1 mRNA downstream 69962 21923712 ~ 21940681 (-) False kansl3
XM_043247797.1 mRNA upstream 26393 22040071 ~ 22054375 (-) True LOC122350992
XM_043247763.1 mRNA upstream 46337 22060015 ~ 22067329 (-) False LOC122350973
XM_043246221.1 mRNA upstream 61332 22075010 ~ 22110087 (-) True antxr1a
XM_043246010.1 mRNA upstream 131845 22145523 ~ 22146997 (-) True LOC122349886
XM_043245990.1 mRNA upstream 146308 22159986 ~ 22161558 (-) True LOC122349876
TU97752 other downstream 234023 21771468 ~ 21776620 (-) True G66086
XR_006251697.1 other downstream 1557512 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 2577508 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 2577508 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 2808266 19202277 ~ 19202377 (-) True LOC122351133
TU97796 other upstream 295 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 15054 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 51220 22064898 ~ 22068757 (-) False LOC122350973
TU97809 other upstream 65773 22079451 ~ 22097808 (-) False antxr1a
TU97810 other upstream 68343 22082021 ~ 22096062 (-) False antxr1a

Expression Profile