RNA id: TU97807


Basic Information

Item Value
RNA id TU97807
length 2100
lncRNA type sense_over
GC content 0.41
exon number 5
gene id LOC122350973
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22060015 ~ 22068757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgttggtgagcaagtgatataatgctaCACTTCACACAATCTTGTTGATTGAAGAAACCAAATCATCTTGGAAGGCCTGAGGGTGAGGGAAGTTTCTGGCTGAGTTACTCCTGCAGCACTGAATTCAGTTCACTGAACTGCTTGTCGCTGGCCTGTCATGTGGGGATGGGTAATGAAATCCGGTATTTGGGTGTTTCAGGAATGGTGCAGGGCGAGGAGGCCCTGTAGATGTGTGTCATGAAGTTTCTCACCGCCTGAGGTAAGAGTTCACTCTCCTGTCTTTCTCATTCAAAGTTgaagttatttttgctttagatATTCCCCCCCTAAACCTTTctgtgacttactttcttctgtggaaggGAAAATAAGATATCTAACAAAATTAACTTTCCCCATTAACTTTCAGTGTAACTTTCAGTTTTTCAGAGAAGAAATAAAGCCATGATGGTGGacttttttgagtgaactatacctgtaaataaagaattttacaaatttaaattgatggcaaacaataaaatgaagttgatttgtgttgttttagctcggtttaattaatgtttttagtaaTGGGATAGTGTATTAAAGTACTTTTAGTTCTGTACTTGTGCTTTTGTGCTATTATGCTAATTGCACAAATTTTTATAAGACTGTCAGGATTTGTACTTGCACTTGACATAGTTCCTGGTTAAATGGGGGAAGGGAGTCACAGTCGTCTGTCACGCTATCCGTCAGTGCTGACTGCAGggatgtaatgtgttttatcatCCCTCTCCATCTCCATCACATCCCTCCCCCatccttctctttctccatccatccgtctCTCTTTATCCATCCTCTCTATCCATTTATCTGCCCTCCCCCCTGCTGTCTTGTCTTTCGCTATGTCTACATCAGAGTCTGTATCTCCTTCTCTTCTCACTCCCTTCCCAAAGTAAACATGGTTTGCTCTTCGTCGTGCATTCTCCGAAAACCGTATCGGTTAacctcttaaaggaatagttcacccaaaaatgaaaatgaccccatattttactcaccccaaagccgTCCTAGGTttaaatgactttcttctttcccaCAAACAGTTTTTAGGAAACTTTTCATGGtttttccaagcttggtaatgcttgtggatagcggtaaatcggatatatccgTGGTGAAACTAACCTAGTACAGTGAGCAAGAATTTTCTCATTAATAATGCGGGCAGAGCCTTTTAGTAATGAACCGTCGCTCTGAGACCCTCAATGTTATTGCACCCatgcttcaaaaacacaaatcaatcatGGCCTTTGTAATTCGAAAATCACACCAAAGCAATATTGCAATTCGTTCATAATGCTGGTATATCATGCTGCCCTAGActgaactgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtgaaaCACAAATTTAGCTGAAGGCTGATTTAGCTGATTTCCTGTGACCAAGAATTTGAAAAACCCTACTCTAAACAATATAAAGACATTTCTCTGGTCTTGAGAGGTTAAAGATATTCATAAATTGGTTTGAAGCAGATAGTTAGACGTCATAAGAGATTCTTAAGAGATGGTATTTTTGATATTCCTTTCCCATGAGTTTCTTTGACTATatattgatattgttttttttcctttgccaAATCCTGAATGAGCCTAACCTGACACCTACCATACTGTACAACTGAGACCACTGATTAACCACAGAAATCCATTCAGTCCAGACCAAGGGGAGTGTTTGTgggtttatttatgtTTACCTCGTAGGGAGCACccctttttattcaaaatgatgATTCATAAGCAGTCGGCTCGTACCTCCCCGGGCAGTGTTTGCTCTCTACGTGGAGGAGGTGTTCCTGGATCCCCGGCGGTCACTATAGTGGCCAAAATGGACAATCAAGTGATTGGATATAAGGATCTAGCAGCTATACCTAAAGACAAGGCCATTCTGGATATAGAGAGGCCTGACCTGATGATGTATGAACCCCACTTCAGCTATTCACCGATGGAGAGGTCATTATCTCCTCGTTCAATCTCCCCTCCTCCATCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97789 lncRNA downstream 51220 22010643 ~ 22013678 (-) True G66115
TU97735 lncRNA downstream 311283 21751768 ~ 21753615 (-) True G66071
TU97707 lncRNA downstream 420215 21571117 ~ 21644683 (-) True G66046
XR_006251666.1 lncRNA upstream 4930 22073687 ~ 22074471 (-) True LOC122350974
TU97817 lncRNA upstream 224682 22293439 ~ 22295953 (-) True G66131
TU97838 lncRNA upstream 296144 22364901 ~ 22365113 (-) True G66143
TU97837 lncRNA upstream 296519 22365276 ~ 22365682 (-) True G66142
TU97845 lncRNA upstream 308153 22376910 ~ 22378639 (-) True G66147
XM_043247797.1 mRNA downstream 10523 22040071 ~ 22054375 (-) True LOC122350992
XM_043247262.1 mRNA downstream 121481 21923712 ~ 21943417 (-) False kansl3
XM_043246221.1 mRNA upstream 6253 22075010 ~ 22110087 (-) True antxr1a
XM_043246010.1 mRNA upstream 76766 22145523 ~ 22146997 (-) True LOC122349886
XM_043245990.1 mRNA upstream 91229 22159986 ~ 22161558 (-) True LOC122349876
XM_043247911.1 mRNA upstream 174445 22243202 ~ 22265861 (-) True gfpt1
XM_043246626.1 mRNA upstream 214592 22283349 ~ 22290847 (-) True naa35
TU97791 other downstream 32905 22028732 ~ 22031993 (-) True G66116
TU97796 other downstream 39107 22013973 ~ 22025791 (-) True G66119
TU97752 other downstream 288278 21771468 ~ 21776620 (-) True G66086
XR_006251697.1 other downstream 1611767 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 2631763 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU97809 other upstream 10694 22079451 ~ 22097808 (-) False antxr1a
TU97810 other upstream 13264 22082021 ~ 22096062 (-) False antxr1a
TU97793 other upstream 192482 22261239 ~ 22265815 (-) False gfpt1
TU97794 other upstream 192628 22261385 ~ 22265815 (-) False gfpt1
XR_006251538.1 other upstream 568518 22637275 ~ 22640307 (-) True LOC122349902

Expression Profile