RNA id: XM_043247763.1


Basic Information

Item Value
RNA id XM_043247763.1
length 1678
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC122350973
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22060015 ~ 22068757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtcagtgaaaCACAAATTTAGCTGAAGGCTGATTTAGCTGATTTCCTGTGACCAAGAATTTGAAAAACCCTACTCTAAACAATATAAAGACATTTCTCTGGTCTTGAGAGGTTAAAGATATTCATAAATTGGTTTGAAGCAGATAGTTAGACGTCATAAGAGATTCTTAAGAGATGGTATTTTTGATATTCCTTTCCCATGAGTTTCTTTGACTATatattgatattgttttttttcctttgccaAATCCTGAATGAGCCTAACCTGACACCTACCATACTGTACAACTGAGACCACTGATTAACCACAGAAATCCATTCAGTCCAGACCAAGGGGAGTGTTTGTgggtttatttatgtGGTTATTTTTCAAAGGAGTGGGAGATGTGTCCTTTTCAGctgaatacaaaaacacacaggatGCTAGAATGAAGCTTTTGTATGGAAGTCCATCAGAAAAGCCCAGAGAAACCCCATCATTGTGCTCATAGTCCACTGACTGCAGAGGTTTTAAGTTACCTCGTAGGGAGCACccctttttattcaaaatgatgATTCATAAGCAGTCGGCTCGTACCTCCCCGGGCAGTGTTTGCTCTCTACGTGGAGGAGGTGTTCCTGGATCCCCGGCGGTCACTATAGTGGCCAAAATGGACAATCAAGTGATTGGATATAAGGATCTAGCAGCTATACCTAAAGACAAGGCCATTCTGGATATAGAGAGGCCTGACCTGATGATGTATGAACCCCACTTCAGCTATTCACCGATGGAGAGGTCATTATCTCCTCGTTCAATCTCCCCTCCTCCATCTCCAGAGGTAAGTTGCATAGTGCATCCCAAGGAGTGGTCAGAGCAGGGCTCTCCAGGAGGCTCCAACATGGGCTCCACGGTGCAGCTCCGCAAAATCAGCCCCGCTTCCAAAGGGCCCATGCAGCACTTCCACAGACCCGACAGTGGCATCAACATCTACAAGAAGCCACCGATTTACAAACACGACGGACAGACGGGAACGTCTCACAGTAAACACGATGTCATCATCGAGTCCTCCAAGTTCCCAGCAGCCCAGCCGCCTGACCCCAACCTGCCTTCGAAGATAGAGACCGAGTACTGGCCCTGTCCGCCCTCTCTAGCTACTATGGAGATTGAGTGGAGGAAGAAGGCAGCTGAGCAGGGAAAGCCAGTGGAGGATGATGACTTTGAGGATCTGACAGAAGATGCAAAGAGACTCCAGGAACAGGAACTTCAGAAGATTCAGTCTAACTTGGGCAAATTGATCCTGAAGGAGGAAATAGAGAAATCAGTGCTCATCCGCAGAAAAACACGTTCCCTGCCAGACGGGACTAACATACATTTGGGATCATCAGCCAGCGCGACGAAATCGGCCTCTTTACCTCCCTGCAGTCGAACGGGCCTCACGAGACTTCAGTCTGCGGACTTCGCCTCCACAGACAACGGAAAAGCAAAAACAgGCGTACAGAATGGCGACGCACAGAGTGGGAGAATGGACAGAGGAAGCTCTCTTCCTAGTATTCTGGAACAGAAGATATATCCCTATGAAATGCTGATTGTAACCCACAGAGGGCGCAGTAAGCTTCCTCCGGGTGTTGACCGGACCAGGTTAGAGGTAAGTCacaaattagaaataattaactatatgaatgaataa

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97789 lncRNA downstream 46337 22010643 ~ 22013678 (-) True G66115
TU97735 lncRNA downstream 306400 21751768 ~ 21753615 (-) True G66071
TU97707 lncRNA downstream 415332 21571117 ~ 21644683 (-) True G66046
XR_006251666.1 lncRNA upstream 6358 22073687 ~ 22074471 (-) True LOC122350974
TU97817 lncRNA upstream 226110 22293439 ~ 22295953 (-) True G66131
TU97838 lncRNA upstream 297572 22364901 ~ 22365113 (-) True G66143
TU97837 lncRNA upstream 297947 22365276 ~ 22365682 (-) True G66142
TU97845 lncRNA upstream 309581 22376910 ~ 22378639 (-) True G66147
XM_043247797.1 mRNA downstream 5640 22040071 ~ 22054375 (-) True LOC122350992
XM_043247261.1 mRNA downstream 116598 21923712 ~ 21943417 (-) False kansl3
XM_043247262.1 mRNA downstream 116598 21923712 ~ 21943417 (-) False kansl3
XM_043247259.1 mRNA downstream 116598 21923712 ~ 21943417 (-) True kansl3
XM_043247263.1 mRNA downstream 116599 21923712 ~ 21943416 (-) False kansl3
XM_043246221.1 mRNA upstream 7681 22075010 ~ 22110087 (-) True antxr1a
XM_043246010.1 mRNA upstream 78194 22145523 ~ 22146997 (-) True LOC122349886
XM_043245990.1 mRNA upstream 92657 22159986 ~ 22161558 (-) True LOC122349876
XM_043247911.1 mRNA upstream 175873 22243202 ~ 22265861 (-) True gfpt1
XM_043246626.1 mRNA upstream 216020 22283349 ~ 22290847 (-) True naa35
TU97791 other downstream 28022 22028732 ~ 22031993 (-) True G66116
TU97796 other downstream 34224 22013973 ~ 22025791 (-) True G66119
TU97752 other downstream 283395 21771468 ~ 21776620 (-) True G66086
XR_006251697.1 other downstream 1606884 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 2626880 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU97809 other upstream 12122 22079451 ~ 22097808 (-) False antxr1a
TU97810 other upstream 14692 22082021 ~ 22096062 (-) False antxr1a
TU97793 other upstream 193910 22261239 ~ 22265815 (-) False gfpt1
TU97794 other upstream 194056 22261385 ~ 22265815 (-) False gfpt1
XR_006251538.1 other upstream 569946 22637275 ~ 22640307 (-) True LOC122349902

Expression Profile