RNA id: XM_043246221.1


Basic Information

Item Value
RNA id XM_043246221.1
length 3104
RNA type mRNA
GC content 0.45
exon number 20
gene id antxr1a
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22075010 ~ 22110087 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATACGCAGCGACGTTAAGTTGCTGAATTGCTTCCTGGGTGCTGATGTTGCTGAGTCAGCTGAAAGACAGAATGAGGAGCCCAAAGTCTCTGATAATGATGCCATCCGCCAGATCACAGCCAAAATCCTTCACCTCATCCAGACTCAAgAAAAGCTGCAGTGCCAAATCTTACACAACACAGCCGGCCTCGAATCAGGAAGTGTGCAGCATCActggaatgaaatatataactttGTGGAACATCTGGCCCATAAGTTCATAAGCCCTCAGTTGCGGATGTCCTTCATTGTGTTCTCCGATCAGGGCAAGATTTTGATGCGGCTTACAGAAGACAGGGAACAAATACGGAAAGGTTTGGAAGAACTCGAGAAAGTGCGGCCAGGTGGAGACACTTTTATGCATGAAGGCATTCAGCGGGCCAGCGAACAGATTTACTATGGTAACACTGAAGgATACCGCACAGCCAGTGTGATCATCGCCCTCACGGATGGAGAACTGCATGACAATCTCTTCTATTACGCTGAAAGAGAGGCCAACCGCTCTCGCAGCCTGGGTGCCTCNNTATGGAAAgctttaaaactattattaaccTTGGCACTTATTCTTGGGGGGTATGTAAACTTGCACTTGTTTAAGCAACTGGCCAAGATCGCTGACAGCAAAGATCACGTCTTTCCGGTAAATGATGGCTTCGAAGCTCTGCAAGGTGTCATCGGCTCGATCTTAAAGAGATCCTGCATAGAGATCCTTGCTGCAGAACCTTCCAGCATCTGTGCCGGAGAGGTTTTCCAAGTCGTCGTGAGAGGAAATGGATTCCTTCATGCTAGAAATGTGGACAAGGTTCTTTGCAGCTTCAGAATAAATGACACTCTCACCAGAAtGGTGAAGCCATTAATTGTGGAGGACACGTATCTGCTCTGTCCAGCTCCTGTTCTTCGAGAGGAGGGAACGGCAGCCTCCCTTGACGTTAGCATGAATGAAGGCCTGAGTTTTATCTCTAGTTCTGTTACTATCACCACTGTAAGCTGTTCTGATGGAACGATCCTGGCCATAGCACTACTGATAGTGATGCTACTGCTGATTCTGGCTCTGCTCTGGTGGTTTTGGCCTCTCTGCTGCACTGTGATTATCCATGAACCTCCACCACCAGTAGTGGAAGACAGTTCGGATGAAGAAGAGGATGGAACTCCGAAGAAGAAGTGGCCCACAGTCGATGCATCCTACTATGGAGGAAGAGGAGTCGGAGGCATTAAAAGAATGGAGGTTCGCTGGGGTGAGAAAGGTTCGACCGAGGAGGGTGCTAAACTGGAGAAGGCGAAGAACGCGAGGGTAAAGATGCCTGAGCAAGAGTTTGAAGCTCTTCCTGCTCGCATCCTAAATAATGGCATGCGAAAACCTCCAGGCCCTCGTAAATGGTACTCGCCCATTAAGGGAAAACTGGATGCATTGTGGGTGCTTCTGAAGAAAGGGTATGACAGAGTGTCCATCATGCGACCGCAACCTGGAGACAAGGGTCGCTGCATGAAATTTACCCGTGTGAAATCCTGCCCGCCTCCTCGGTACCCACTTTACAACAACCCGTCGAGTCACATCTACAGCCTCCCCCACAGCCGATGCCCTCCTGTCCCGCAGGGCACCCTGCCGCCCACCCCGCGCTGCTCCGGCCAATCACCAAACTCCACCCTGCCCCCTCTGCCATCAACTCCGCCCCCAGCATCCATAACCCCTCCCCCTTACACACCACCTCCGACCCGAGCCCTTCCTCCTACCTCTCTGAACATCAACGTGGCTCTGCCTCCTTCTCCACCCACACCACCGCCACCAACAAACTTCATGCAGGCCTCGTCGCCCAGCACCTTGCCTCCGCCCCCTCAGGCGGCTCCGCCCGGACGAGCCCCGCCCCCTTCTCGTCCACCACCTCGCCCAGGCCTTGACGAACCGCAGTGCTACCAGGAATGAGTAGATCTAAGTCATTTGCACAAGAAAAACTGCTGGTTACGCCGGTGAAAAATGAAGTGCTCCATTTTTCAGGCATTAGAAAAGGAGCAACATGATTGACAATGGTTGCAAATGGGTTTTGGCAAATGGCAGCGATTGTATTATTGCACAGCTGATACTGATTAGGTTGACAAACATTCTGCACATCGACGAAGTAGCTTGAGGTTTGCTGACTGTCAATATCACCATGCCAAGTTCTTTATGGGTTGTTTTGGGGTTTAAACTTAACAGTCAGAAGGagataataaattataaacatttgGAGTTTTTAAAACGAAAAATCGTAGATGTATTTGATTTTCATAGAAAAATTCCATCCGTTTGGATTTCACAGTtcacatgaacaaacaaataaacttaaTGTGATGTCACGTAAAAACGTGTAGGATTTCTGCAATAAACGGAATGAGTTTACACGACAgccatgtttatatatttatcatcaataaataaatctcacgTTTTAAATAAATCGAATATCCCTTGTTGCGCGGCTAGCCGTATTTCATCCATTTCGAGCGAATGAATTGAATCGTTTTATGCTGATCCTAAAcaaatttcatgcattttgaattattattattttaataaaatcaaaaaatatgCAAGTAGTAAACTATGCCGTGATTTTATAAAGCACACCTGTTTTAATTATGCAAGTTTGACAAGTATGCATCACATCAAgcttattattttgtattatgttaaaactgtgtattttatgtacgctttaaatagatttttaatttaggTTCTTTTTGAGGATGGaaactgataataaaataattgactaATGGGTTTTAATATTCAGCAACTCAGTGGCCTGTTGACCGTTATTCTGAAATGCCGCCAcgttcttcatttaaaaaaaacgattctGTAAATTATTCACGTTGTGTAATTATAAGCATCTTAACGCAGCTTTGCAGATATATTAGAAAGAAGCATAAGTATTATAGATCCTTCAGTACTTGAGAGATCCGGTTCGGCTTTGATGCTTTTTGAGTATATCAGGAAAACATCTGCAGGATAAAAAAATTTCAAACGACTGCAAGGAAACAATGGCAACACTGATCAAATACTTGATTCGGCCTGTAGTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251666.1 lncRNA downstream 539 22073687 ~ 22074471 (-) True LOC122350974
TU97806 lncRNA downstream 6253 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA downstream 6253 22064898 ~ 22068757 (-) False LOC122350973
TU97789 lncRNA downstream 61332 22010643 ~ 22013678 (-) True G66115
TU97735 lncRNA downstream 321395 21751768 ~ 21753615 (-) True G66071
TU97817 lncRNA upstream 183352 22293439 ~ 22295953 (-) True G66131
TU97838 lncRNA upstream 254814 22364901 ~ 22365113 (-) True G66143
TU97837 lncRNA upstream 255189 22365276 ~ 22365682 (-) True G66142
TU97845 lncRNA upstream 266823 22376910 ~ 22378639 (-) True G66147
TU97871 lncRNA upstream 275995 22386082 ~ 22387783 (-) True G66163
XM_043247763.1 mRNA downstream 7681 22060015 ~ 22067329 (-) False LOC122350973
XM_043247797.1 mRNA downstream 20635 22040071 ~ 22054375 (-) True LOC122350992
XM_043247262.1 mRNA downstream 131593 21923712 ~ 21943417 (-) False kansl3
XM_043246010.1 mRNA upstream 35436 22145523 ~ 22146997 (-) True LOC122349886
XM_043245990.1 mRNA upstream 49899 22159986 ~ 22161558 (-) True LOC122349876
XM_043247911.1 mRNA upstream 133115 22243202 ~ 22265861 (-) True gfpt1
XM_043246626.1 mRNA upstream 173262 22283349 ~ 22290847 (-) True naa35
XM_043247068.1 mRNA upstream 214699 22324786 ~ 22364823 (-) False ntrk2a
TU97805 other downstream 6253 22064898 ~ 22068757 (-) False LOC122350973
TU97791 other downstream 43017 22028732 ~ 22031993 (-) True G66116
TU97796 other downstream 49219 22013973 ~ 22025791 (-) True G66119
TU97752 other downstream 298390 21771468 ~ 21776620 (-) True G66086
XR_006251697.1 other downstream 1621879 20453031 ~ 20453131 (-) True LOC122351134
TU97793 other upstream 151152 22261239 ~ 22265815 (-) False gfpt1
TU97794 other upstream 151298 22261385 ~ 22265815 (-) False gfpt1
XR_006251538.1 other upstream 527188 22637275 ~ 22640307 (-) True LOC122349902
TU98109 other upstream 685535 22795622 ~ 22796362 (-) True G66310
TU98104 other upstream 724600 22834687 ~ 22835591 (-) False ddx51

Expression Profile