RNA id: TU97817


Basic Information

Item Value
RNA id TU97817
length 2488
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G66131
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22293439 ~ 22295953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gacagagagagagacagtgtatgcatgagagagagagagagagagagagagagagagagagagagagagagacagagacagagagagagagagagagagagacagagagagagagagagagtgtgtgtgtgagagagagagagagagagagagagagacagagagagagagagagagagagagagacagagacagagagagagagagagagacagagagagagagagagagagagagagagtgtgcatgtgagtgagtgagagagagagagagagagagagagagagagacagagagacagagagagagtgagtagagatggagagtgtgtgtgtgagagagagtgagtgagtgagtgagagagagagagagagagagagaaatagtgcgagtgagagagagtgtgtgtgtgtgtgtgtatgtgtgtttgtgtgtgagagagtgtgtgtgagcgtgaacGAGAGAGAGATAGTGTGAGTGAGGGACCACTGGGAGTCATGGGAACACTTGCTGATGGTATGGTGTGGGGGTCACAGTGCAGACAGTAGATATTACACATATGTGGTGTATGGTTACGGGCAGCGGGGGTCAGCGGGGTCAGGGGGAAGAACAAACCAATACTGGATATCCCACAGCAGTCACATTTCACTGATCAGCTCAGCTTCTCAGGGCCTGTTTGTTGCACTTTTGTTTATCCGAACGAGACATTTAATTACttctaaattaattatttacatgatGGACTGATGTATTAATCAAATTGCTTAAAGGCGTGCAAATTAAATGATAGTAAAAGTTTCAaatgaatcttaaaaaaaatgtctatgcactaaaaatttttattataatataataataataaaaagtcgCTTCCACCTCCCCTGCATTTACTGTAGATCTAATCTAATATAGTAACGCTGTCATATCTTAAGATGAAACCGctcatgcaaaacatttttttttatattaaccacattttcttttataaaggCCGGTTTTTAAACCTTATTAAATGCATCATGTTTCGTGTCAATTTCTTAGAATTAACCAATAGATTAAATTTACACTGAGGCCGTTATCAAAGAAATTgcattatttacacattatttacacatattttatatatatatatatatatatatatatatatatatatatatataaatacatttctgttgaTGTTAGTTATCAAATTGGTTAAGTCATTTTCATGATAATCAAAGCAAACATTATTATGTTCTGATTTTGCACAAAAAGATCACTTGTAGTAAGAGAGTAAAGTTCAATTTGATTTCGACTAAATATACCGTATGCAagcatattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtcaccTTGAGTCTGGATGAGGTGAAGGATTTTGCCTGTGATCTGCCGGATGGCATCATTATCAGAGACTTTGGGCTCCTCATTCTGTCTTTCCAGCTGACTCAGCAACATCAGCACCCGGGAAGCACTGGGAACACAAGAAACCATCACAACAGGAAAAGCACCCCATCATCAAAGCTCACTACATAGTAAAGATGTCTCACGCCTATTTAGTTAACATCAGACATTCAGCAACTTAACGTACGCTGCGTATCATAATCACAGAGCTGCTAATGAACGCGTGTGTGAGAATTTAATTCATACACAGCTTGTAGGgtttataaatatagtataaaaacaattagtaagttgtatataaaacatatagatagatatagacagaAGTCTATAGAGTGAccccaaatgtgtgtgtgtgtgtgtgtgtgtgtttacgagagggaaaaaaactaacCTTTTTTCAGACGCCATTTTGGGTTTATTCATGTCTTGTCACATTCAATAAGTCGTCAAACTGACTGCtgaggggaagaaaaaaaaacaaaatgcgttCATGAAGGGAATCTAATTTAATTCATGAGGAGTATCGAGTCACacgaatgcattaaaatgatgcaGAGCTTATGGAAGGCTTGTTCACACTATCATGAACCACAAGTACCCTACCAAGGATAGAACAACGGCTGTGTCTTAAAACCTAGTGAGCACCTACCTATACAGCTACTTCCTATCAGAGCCTACTGAGCAACATATCACCTATAACCTATACAGACTGCATTTTGGCCATCAAACccttacattttatacaatgttTAGAGTATCATAGTATATTGGATATCATTTCTGGGCCTCGAAATCATTTGGGCTTTGGGTTGAGATCATATTTTTATaccttatttatatatttttatattcacagcCATTCTGTCTATATATTTTGGGTATCAAACCATAGAGATCTTTCAATATGTACAACATTTAAGGCCCCAAAGCCACCCTGACATCAGGTTTGGGCATAAGACTCTATTGATAttcctacctagacagcattaCAGCCACTATAGCTTTTCTGTCTACATAGACGGCATTTTTAAGCATCGAACCCTAGAGAATTACCAATATATAAACCAATT

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251666.1 lncRNA downstream 218968 22073687 ~ 22074471 (-) True LOC122350974
TU97806 lncRNA downstream 224682 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA downstream 224682 22064898 ~ 22068757 (-) False LOC122350973
TU97789 lncRNA downstream 279761 22010643 ~ 22013678 (-) True G66115
TU97735 lncRNA downstream 539824 21751768 ~ 21753615 (-) True G66071
TU97838 lncRNA upstream 68948 22364901 ~ 22365113 (-) True G66143
TU97837 lncRNA upstream 69323 22365276 ~ 22365682 (-) True G66142
TU97845 lncRNA upstream 80957 22376910 ~ 22378639 (-) True G66147
TU97871 lncRNA upstream 90129 22386082 ~ 22387783 (-) True G66163
TU97872 lncRNA upstream 90129 22386082 ~ 22386883 (-) False G66163
XM_043246626.1 mRNA downstream 2592 22283349 ~ 22290847 (-) True naa35
XM_043247911.1 mRNA downstream 27578 22243202 ~ 22265861 (-) True gfpt1
XM_043245990.1 mRNA downstream 131881 22159986 ~ 22161558 (-) True LOC122349876
XM_043246010.1 mRNA downstream 146442 22145523 ~ 22146997 (-) True LOC122349886
XM_043246221.1 mRNA downstream 183352 22075010 ~ 22110087 (-) True antxr1a
XM_043247068.1 mRNA upstream 28833 22324786 ~ 22364823 (-) False ntrk2a
XM_043247067.1 mRNA upstream 28833 22324786 ~ 22364823 (-) False ntrk2a
XM_043247066.1 mRNA upstream 28833 22324786 ~ 22364822 (-) True ntrk2a
XM_043247981.1 mRNA upstream 70447 22366400 ~ 22370617 (-) False rmi1
XM_043247983.1 mRNA upstream 70447 22366400 ~ 22370614 (-) False rmi1
TU97793 other downstream 27624 22261239 ~ 22265815 (-) False gfpt1
TU97794 other downstream 27624 22261385 ~ 22265815 (-) False gfpt1
TU97757 other downstream 39250 21784704 ~ 22254189 (-) True G66090
TU97809 other downstream 195631 22079451 ~ 22097808 (-) False antxr1a
TU97810 other downstream 197377 22082021 ~ 22096062 (-) False antxr1a
XR_006251538.1 other upstream 341322 22637275 ~ 22640307 (-) True LOC122349902
TU98109 other upstream 499669 22795622 ~ 22796362 (-) True G66310
TU98104 other upstream 538734 22834687 ~ 22835591 (-) False ddx51
TU98264 other upstream 1281000 23576953 ~ 23583368 (-) True G66410
TU98323 other upstream 1362112 23658065 ~ 23663536 (-) True G66451

Expression Profile