RNA id: XM_043246176.1


Basic Information

Item Value
RNA id XM_043246176.1
length 2251
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC122350000
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22532468 ~ 22540233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAACTGAACTATTCACACTACagtttatacattatatttctaaaacccgtacatagatatatataatagtttcacgatttatgactGAGTGCTTGAAATAAAGGTCCGCGTGGCGCTGACACGAGCCAGGAGTTACTATAATGGCACTGTTTACGATAAATAgGTATTTAGGGGATGAGGAGGACGGGGAATACTGCAGAGAGTCTCGCTCCAGAGCTTTACTGGCTAAACTACAGGAGCAGGTCAAAGCCAGAGAACTGCAGAGCATCTCAAACAGAGCTGATGAAGATGGGGACCGCCAGGGTGataaagaagagaagaaaaggaaTCGGGAAGAAGCAGAGACGGAGACAGAGGGAGTTCAGCGTAAAACAAAGAAGagtaaaaaagagagaaaaactgaTATCAGTGATGAAGTTGCCAGTTCgactaaaaagaagaaaaaacagaagaCATTGTCTGCTGAAAACAAGAACACAAATAGAGcagaTGAAGAATCTGATAAAGAGAAATCTATAGAGATCACAGAAACAAGTGAAAGTGGCCTAGAGGAAAATAAGACGACTGAAGAGCCTGCGGCCAATCAGGAGCCAAAGGAAGAGAACGGCTCCTCCCAGACCACCTTCCGCATCCTGGGGGGCTTCGAGGAGAAGACTGTGCAAAAGGTTAAAAGAGTGTTGCCTCAATGGTTGGCACGGCCTGACGTCATTCAAAGAGACATTAAGAGCAACCTCATTCCCATGACTGAGGTGCCAGGCATCTGTCCCACACTGCTGAAGAAACTAGAAACCAACGGAATAAAGAGCTTCTTTCCAGTTCAAGCCGAGGTCATCCCTGCCATCCTAGAGAGCGTGAGCTCAGGGCTGCTGCTCGGCCCAGGTGGCTACAGACCCAGAGACATCTGTGTGTCTGCTCCTACAGGAAGTGGAAAAACACTGGCGTTCGTGATACCCGTTGTACAGGCGCTGTCCAAGCGCGCGTGGTGCGTGAGGTCCGTCGCCGCTGTACTTCCAACCAAGGAGTTAGCGCAACAGGTGTCAAAGGTGTTTAGCACATACACCGAGGGCACCGGTCTTAAGGTGGTGATGATCACAGGCCAAAAATCCTTTCCTGCAGAGCAAACAGCGCTTTCTGAAATCAGAGGAGGTGTTAGTCACAGTTCGGCTGACATTGTGGTGGCCACACCAGGCCGGCTGGTGGATCAcatcaacaaaaacagcaacttCAGTCTACAATCTCTACGATTCCTGATTATTGACGAGGCGGACAGGATGATTGACAGCATGCATCAGTCGTGGCTCTCTCAGGTGACCAAAGCAGTGTACAGAAGCCCAGGCGACACACAGACTTCTGTCTTCAGGAGAACCCTGCCCGGACCGATCACAGTGGCAAGtttgAGTCCTCCACAGATTCCTCTACAGAAGCTGCTGTTTTCCGCCACTCTCACCCAAAACCCTGAGAAGCTgcagctgctggatctgcaCCAGCCTCGACTCTTCAGTTCCACACACAGCGGTACGGAGGCCAGCGCACAGAGCCAGGACGTTTTTAACTTCCCTCAGGGTCTCGCAGAGTATTATGTTCCCTGCTCCCTAAGCAATAAACCGCTCATCATCATTCACTTCCTGCTGTGGCTCAAGTTCAGGCCTGTTTTGTGCTTCACGAACTCCAGAGAAGCGGCTCACCGACTGTATTTGCTCGTGAAGCTGTTCGGCGGTGTGGAAGTAGCCGAGTTTTCCTCTAAACTGAGCCCGAGTGAACGacaaaaaacactgaaggaCTTCGAACAAGGAAAGATCCCGCTGTTAATAAGCACAGACGCCGCTGCCAGAGGTATTGATATCGCCGGCGTAAAATGTGTCATTAATTACGATGCTCCTCAGTACATCCGAACATACATTCACAGGGTGGGCAGAACAGCGAGAGCAGGGAAGGGCGGCTCAGCCTTCACCTTCCTTTTAAAGTTGCAGGAGACGTGTTTCCTGAAGATGGTGAGGGATGCGGGCAGTCCTGGCATAAAGAAGCACATTATAAAAGATGGAATTCTTAGAAGCATGGAGCCCCGCTATGAGCAAACGCTGGCTGAGCTCGGCGAAGTTGTGAAGgaGGAAAAGGCGAGGAAGCGATTCTGAGGTGGAACTGACCTGAGCTGTAcacctgtttgtttttcagtgtttctcaAAAAATGTATGCCTggactgtaataaaataagttgcaaatgtttttttttaataaaatgtacaaatcc

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14807 DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97910 lncRNA upstream 718 22530253 ~ 22531750 (+) True G66189
TU97902 lncRNA upstream 19223 22512179 ~ 22513245 (+) False G66183
TU97903 lncRNA upstream 19223 22512179 ~ 22513245 (+) True G66183
TU97674 lncRNA upstream 243621 22288308 ~ 22288847 (+) True G66024
TU97672 lncRNA upstream 247036 22283734 ~ 22285432 (+) True G66022
TU97979 lncRNA downstream 182269 22722502 ~ 22723361 (+) False mfsd2al2
TU97981 lncRNA downstream 182269 22722502 ~ 22723908 (+) False mfsd2al2
TU97971 lncRNA downstream 184349 22724582 ~ 22727444 (+) True fkbp1aa
TU97972 lncRNA downstream 184349 22724582 ~ 22727444 (+) False fkbp1aa
TU97973 lncRNA downstream 184349 22724582 ~ 22727444 (+) False fkbp1aa
XM_043246168.1 mRNA upstream 38504 22459937 ~ 22493964 (+) True opn7d
XM_043247398.1 mRNA upstream 94097 22395147 ~ 22438371 (+) False frmd3
XM_043247397.1 mRNA upstream 94097 22395148 ~ 22438371 (+) True frmd3
XM_043246361.1 mRNA upstream 138466 22385203 ~ 22394002 (+) False gkap1
XM_043246014.1 mRNA downstream 1565 22541798 ~ 22549058 (+) True LOC122349889
XM_043247882.1 mRNA downstream 14634 22554867 ~ 22558195 (+) True LOC122351043
XM_043246068.1 mRNA downstream 107615 22647848 ~ 22659247 (+) True sypb
XM_043246643.1 mRNA downstream 120916 22661149 ~ 22673282 (+) True plp2b
XM_043246641.1 mRNA downstream 120918 22661151 ~ 22673282 (+) False plp2b
TU97654 other upstream 411672 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 414634 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 567910 21963514 ~ 21964558 (+) False LOC122350768
TU97624 other upstream 570623 21951413 ~ 21961845 (+) False G65995
TU98063 other downstream 443807 22984040 ~ 22985584 (+) False mfn2
TU98168 other downstream 514393 23054626 ~ 23151947 (+) False prdm16
TU98282 other downstream 1092150 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 1212335 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 1213228 23753461 ~ 23783631 (+) False acot7

Expression Profile