RNA id: XM_043247681.1


Basic Information

Item Value
RNA id XM_043247681.1
length 7134
RNA type mRNA
GC content 0.47
exon number 18
gene id prdm16
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23054616 ~ 23401562 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGGAGGAGGGAAAGAGATAAGTGATCTAAAGGAGACACGATAGGACAAaaagtgatgatgatgaatacATTGGAAAGTTTTTTGGCCCTGACGAGGGTGTCAGATTGAATGGCCTGTGCGCATGTGCGAAGGTGTCCAAACTGACAATGCTCGTGAGATGAAGATagcgctgctgctgcttctgagcTCAAGGAGGACGCGAGGAATCTACAAGCCGACAAGATGAGATCCAAGGCGAGGGCGAGAAAACTGGCCAAAAATGACAGCGAGGCAGTAGACAGCATGTACGACACAGAGCCCAATCTCGTGACCGGCGAGAGCGCAGAAGAGGAGACAGAAGACAGCATCATGTCCCCCATCGCGGTGGGGCCCACGTCCCCTCAGACCTGCAATGAGGACTTCACTCCTAAAGAGGGCTCACCCTACGAGGTGCCCGTCTACATTCCCGACGATATTCCCATACCTGCAGACCTGGAGCTCCGTGAGTCGTCAGTTCCAGGAGCCGGCCTAGGAATCTGGGCCAAAGTCAAAATTCACATGGGAGAACGCTTCGGACCGTACAACGGACTGCAGAGCGCCACGGTGAAGGAGACCACTTATGGATGGGAGCAAATGCTGAATGATCATGAAACGTCGTCTCAAGACAGCTGTATTAAAAAGGTGATGGACAACATGGGTAATGTGAAGTTCTGTCTGGATGGGCCTCTGGAGGCCAGCGGGAGCTGGCTCAAATATGTGCGCACTGCCCCGTCCCACGAAGAGCACAACCTGGCCATATGCCACATCAGCGAAGATCAGatCTATTATAAAGCTATTAGAGATATTGAAATAGGGGAGGAGTTACTGGTTTACATGAAGGACGGAGTTTTCCCAGGCTCAATGGCACCGAACCTGGAAGATGAGCAGATGTACCGCTGTGAACACTGTGATGAGCTCTTCACTTCAAAGCTGGAGTTACGGCGGCATCAGAAATactcctgcagcagcagcaactCTATCTTTGACTCGCTAAGCGAAGACTTCAAACAGGAGCGCGAAGACAGCGATGAGCCGGTGCACGAGTGCAAAGACTGTGAAAAAATCTTCCCTAGCGAGTACAGTCTGGGGCAGCATATGATCGTAcacacagaggagagagagtaTAAGTGTGACCAGTGCCCCAAAGCTTTCAACTGGAAATCCAACCTCATTCGCCATCAGATGTCACATGACAGTGGCAAGCGCTTCGAGTGTGAAAACTGTGATAAGGTGTTCACAGACCCCAGCAACCTCCAGCGCCACATCCGCTCTCAGCACGTCGGTGCCCGAGCCCACACCTGCCCTGAGTGTGGCAAGACCTTTGCCACCTCCTCGGGCCTCAAGCAGCACAAGCACATACACAGCAGTGTCAAGCCTTTCATCTGTGAGGTGTGTCACAAATCGTATACCCAGTTCTCTAACCTGTGCCGTCACAAACGGATGCATGCAGACTGCCGCACCCAGATCAAGTGTAAAGACTGTGGGCAAATGTTCAGCACTACCTCCTCCCTCAACAAGCATCGGCGCTTTTGCGAGGGCAAGAACCATTATAATCCCGGAGGCATATTCACACCGGGCATACCAATGACATCCAGTCACATTTTAGGCAAGTCCAAGTCTCATCCTGGCTTGAACCATAGTGGACTTGGCTTCGGGGACTACTTCCCATCCAGGCCACATCATGCAGGTTTGCCCTTTTCCCCAGCACCCCCTGCATTCCCAGCCCTATCCCATGGCTTCCCAGGTATCTTTCCCCCATCGCTATATCCTAGACCGCCATTGTTACCTCCTAGTCCGCTGCTCAAGAGTCCAATTAGTAACAGTCAAGACGGGAAGCTGATTCCTCTTGATGCTCCTACCCTTTCTGCAGTCACATCCATGAACAACAGCAATGGCAATGTAGGGAGCAGTCTCAGCAGCCAGTCAGAGGAGAATCGAGAATCCAAACTGGACTTGTCATTTCACGACAACAAGAATAAAGTGAAGATGAACGACATGTCTGATGGTAGTGACTTGGAAGATGTCAACACGTCTAGCGGCACAGATCTAGACACCACCACTGGCACGGTGTCTGGCTCGGACCTAGAAAGTGAGGCAGAAAGCGAACGGGAGAAGAGCAGGAGGAAGCCAGTACAGGAGAGCAAGCAGGACGAAGTGAGCAGCAGTTCGGTATCTGTCTCCAGTTCAGGGAACCTCCCTAGTGAGCGTCCTTTCCTGTCCTCCCAGCATTCCTTTTTCCCACCGCCAGAGGAGCAAGCACTTCCACCTTCTGGGGCCACCACTGACTCCATCAAAGCCATTGCCTCCATTGCAGAAAAGTATTTTGGCCCAGGTTTCATGGGCTTGCAGGAGAAGAAAATGGGCTCCTTAAACTACCATTCCATGTTCCCTTTCCAGTTTCTGCCCAACTTTCCACATTCCTTATACCCGTTCACAGACAGAGCACTCAACCCTGGCATGTTCTTCAAACCTGAGCCTAAGTCCCCTCGTGAGCACATACAGAAATTACCTACAGCCACTGGTGCGGATTCACCCTTTGACCTAACCACCAAACCCAAGGAGGTCAAACCTCTTCCTCCACCCCCCAGCAAGCCAGTCTTGCCATCAAATACCCCCTTGGCCCCTGGCGAGGAACAACCTCTGGACCTCAGCATAGGCAGTCGAAGCCGAGCTAACCAGAATGGTGGCACGCATGAACAGCGCAAGAATCATGCCTTTGGCATAAACTGCAAAGCAGCTAAAGATGAACACCCAGCACTAACTCAGTCCCAGAACTTGCACCAGCCCCAGATGCCTCAACCACAAGTATCCCTTCCCCAGCCACCTCCTCCCCAGCAGCAGCCGTCGCTCCACTACGCCAAGCCCTCGCCGTTCTTCATGGACCCCATCTACAGCAGGGTGGAGAAGAGGAAGCTAATAGACCCAGTAGGAGCTCTAAAGGAGAAGTACCTGAGGCCGGCACCACTACTCTTTCATCCTCAGGTGTCTGCGATGGAAAACATGACTGAGAAGTTGGAAAGCTTTAGCGCTCTGAAACTGGATGCTCCCAATTCCCTCCAGCACTCCTCACACCACCTTTTTAACTTCCGCTCCCCGCCTCCCTCTCTTTCCGATGCTATCTTACGCAAAGGCAAGGAGCGATACACCTGCAGGTACTGTGGGAAAATCTTTCCCAGGTCAGCTAATCTTACAAGGCACTTACGAACACACACAGGAGAACAACCCTACAGATGTAAATACTGTGACCGTTCATTCAGCATCTCCTCCAACCTCCAGCGACATGTCCGTAACATTCACAACAAGGAAAAGCCTTTCAAGTGCCACCTTTGCAATCGCTGCTTCGGTCAACAGACCAATCTGGACCGCCACTTAAAGAAACATGAACATGAGAATATTCCAGTGAGTCAGCAGTCTGGGATCCTCTCGAATTTAGGAACAAATATTTCCTCACCGAACTCTGAGTCTGACAATCATGCACTTTTGGATGAAAAGGAGGACTCGTATTTCTCAGAGATTAGGAACTTCATCTCCAATAGTGAGCTGAACCAGGCCTGTAGCTCCTCTGAGAAAAGGTCAGAGCTGACGGAGGAGGAACAGCCTCAGAGTCATGCTCACACCACCTCAAAActggaggaggaagatgaggagATGGAGGGAGATGATGAAGACGAGGAAGGCTCGTTGACAGAAAAGTCCCAGGACGAGACGGCTTCCCCCGCCACTATGGTGCAGGGCACCTACGACGAGGACGAGGAGCCGACCCCTCTCCCCATGTCCTACGAACACACTCGCAGGTGTATTGAGGAGGATGCAGGCCTATTAGATCTGGAACCTCTGGCTGGTTTCCCCAAAGGCCTGGAGTTCCATAAGGCTGGCGAGGAGCCCtatgacattaaagacatttttagcaCCTCGGTAGAGTCGGAGGCGCTGAAAGAAACACTTTTCAGACAGGCTAAAACACAGGCTTATGCAATGatgctctctctgtctgagaACACCAATCTGCATTCATCCTCCCAGAACTCCTTGGATGCCTGGCTCAACATGGGAGGAGGGCCGTCGGAGACGAGCTCCTTTCACCCCCTCAACAACATCTGAGCACACCTACAAGACGAACCGGAGATGGAGGGAGAAAGGAGGAGAGGGCAAGAGACCACCGTGAAGATGCGTCAAAAAGAGCTCGTGAAGACCAGCAATGCCACCACTACGCGTGCAAGGAGGAGAACGTACTGTTGAGTGAAACAGACACCGACGGGAGAGTTTTAACCCAATCCCAGCCACTAAAGTAACGTTCCCTCCTCACCGGCCGATTCAAGAGGGAGCCTTGCATTCGACTGACTCTCAGATCACCTCATTTTCGATGATATGCATTTCGTAGAGACTGCTCTCTGGGGGTTTGGACGTGGAGAAGCGGACAGGGTAGTCGAGCGTTTCTTCAACTGGAGATTCGAACCGTTTCTACACAGCGTTCCATTCTCACGTTGATTTTCTACAGCACTGTACCAAGGTTTCCTTTCTGTTAACTCAAAAGCCCAAGTCTTACAGTAGATCGTTGCGGTAGACATCAACATTGATTTCCGATGGCAATAGAAGCACTTAAGTCTAGCCCACAACTAGCATGCTAACCCTCCCAACCGAAGGCTGAATGCAGTTTGTAAGCCACTGTCTCAAAACGTAAATGCTGGAAGTCACTGGGAAACCTTTGAGATTCGTGTTCGGCTGTGTGATCCTGTCTCGTCCCCAGCCGGACATCCGTACGATAAATCACGCAGCACGCTTGTATAGCATCACGGTCattgtaattattgttgttatggTGAGTATCGTAGCTGTTTAGTCCCAActgaaagtttgtttttaaaagttaaattattcTCCAGTGGGGCAATTGGaaaacttttctctttttcttgcattcagtaatatgatttttttttgatttgttcttCGGTAAACagtattgtttctttttaagcaCATCTGTgcttaaatgttaatataattctTAGTGAAGGACCAAATTTGTACGATATTGTTGTATGATGTACAAACTAAGTTAACCATTGGTAGCAGAGAGTGTTGTGTGCCAAATAAtcccctttttttctttgacaatCATTTTCCTGAGTGGTCGCCTCCactgtgtagtttttttttggtctcctCTTTCTACTTTTTTCCCCCCGTCGTTGCTACTTACGTTGATGAGTGTCtgtcttgtatttattttgattttagttttttttttttttcctgattaatgaaaaatgaagaaaaaaacgaCTTACCCACTCGTTCGAAGGaattaaattactgaaatatcCTGAAAATTCAGAATTGCTCAAAAGCTCTTCGTTGCCAAAATCTGAATTGCGAAAGAATGCGTTTTTATTACGAGCACATAATCGTGAAGTCTGGTTTGTGACGCCGTCTGTTCAACCATCTAGAAAAGTAGGCACTGCgtgatttaagaaaaataaaaaacgaaaaaaaaaaactttttgactAAATTATCAGGTAACTCAATAGAGGGGCATTATATGTTGACGTATACGTTTTAAGCATCTTCGTAAAGCAAATGGGTCGACAGCGTATCTCTGGGTTCAAATCGCACGTTTTTTAATGTTCCTTTCACTGGGAAGAGCCATATACATCAGCCAGTCAAATTCTACATGATTCAGATACTTCATATTATGCATCCCAGAAGAGACAACGTAAGCAAGAGGGCTATCAAATGGTGAGCAGCTACACGAGAGCGTAGAGAGACACCCAGGTCCTCATCCAACTCCAGAACTGTGAAGCCAGCGAATGAATCGTAAAAAGCAGCTGAACGCATATCATGAATGTGTAGAGTAGATTTAACATGTAGGTAAACGAGTCAAAACCGAACGTCTGTTTGGTCGGGAACTCGTACTCTCCTCGATTCTTGTTGGACGTTTAAAGACTCTCCGAAATCAGCACTTAATTCAAACGCTTACCCCCGTCTGCCCGGTTCACACTTCACGTCTTAGTACTGATATCGATAAAACTTTCTAAGCAAGGCTGGTTTTAACAAGCACTTTAACTCTTGGGTCAAACAGGCAATTTATAGCAGAGGCTTTCAAATAAAGCACGTTCAAGCGGCGTCGGAAGAGCAGTGAAATGCTGTGTTTTCACCGCGAACGCACACCAAGCGAGGCGGACTTTCACAGGGACTCCAGCTGCGTAAAAACGAATTTCATTTACGCTACCAGGTGGCGCACTGTGTGATCTTACCTATTTCCCCCGCTGCATACCTTCGAGTGAAATGCCTGTTTGACGCGCACGATTGCTGGGGATGTGATGGGATTATGAGTACGGAGAAGTCGTGTCACATACTACTGTACTGAGCGAGCGCTGTAGGTGGAGAAATTGACCCACACTTAAAATCATCACGGAGAAAACGGTCCAAAAATGAACAATGCAGACGTCCTCGGGCCCACTGTTACGTCGCAAACGAACGTACCATTTCAAAAACCACAGATAACGTGgtttctctaaaaaaaacaaaatgtatagtatttcaaaaaaaaaaaacaaaaaagacacagATATGtctgaaaattaattttaaacatggGTTTGAAAATAGATGGTGCTTGTTTCATTTGGATATGAGTTGTATATTGCTTctgttatgtttattaaaactattgTGCATGACTTGTGTTTTAGAGGTCATAATGGTGTCCATTTGTGAAACGTgtatcttaaattaaaaagaaaaaaaaaataatgaacttGTAGATGCACTTATTGTACATGTGGTTAGGTTAGTAGGTTTGACTTTAAGTCCTGTTTACTGCCTTAAATACTATGGGCAGATGGTTATTGAACTGAACAATATGCTTGTGGGAgagaaataatgacaaaatttaagGATTGTAGAATAATACTGAAAATTCTGAAATTCTGAAGTTCTTTTTGATGCTTGTGATTACTGAAGATGTACTTTAGAGCAATTTCATGGAAAACACAAGATTCTGATGTTAATTCTGTAGAATAGATATGTATACCAAATGTAATCTTTCCAATGCTATGAAGAATTTATACATGAAATTGATATGCAATAAAAACCTGTGTGCTTTTTATA

Function

GO:

id name namespace
GO:0061337 cardiac conduction biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22410 PRDM16; [histone H3]-lysine9 N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98064 lncRNA upstream 67658 22984040 ~ 22986958 (+) False mfn2
TU98062 lncRNA upstream 128848 22899436 ~ 22925768 (+) False wrap73
XR_006251621.1 lncRNA upstream 143234 22909647 ~ 22911382 (+) True LOC122350789
TU98027 lncRNA upstream 254462 22799639 ~ 22800154 (+) True G66261
TU97971 lncRNA upstream 327172 22724582 ~ 22727444 (+) True fkbp1aa
TU98171 lncRNA downstream 3446 23405008 ~ 23405312 (+) False LOC122350936
TU98176 lncRNA downstream 31247 23432809 ~ 23433745 (+) True G66350
TU98180 lncRNA downstream 32556 23434118 ~ 23435033 (+) True G66351
TU98273 lncRNA downstream 213654 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 219365 23620927 ~ 23623471 (+) True G66418
XM_043247463.1 mRNA upstream 67454 22973995 ~ 22987162 (+) True mfn2
XM_043247808.1 mRNA upstream 85643 22956869 ~ 22968973 (+) True plod1a
XM_043246224.1 mRNA upstream 108462 22944210 ~ 22946154 (+) True LOC122350040
XM_043247503.1 mRNA upstream 129683 22915891 ~ 22924933 (+) True wrap73
XM_043247710.1 mRNA downstream 2151 23403713 ~ 23410561 (+) True LOC122350936
XM_043247581.1 mRNA downstream 21110 23422672 ~ 23423662 (+) True nppal
XM_043246370.1 mRNA downstream 24346 23425908 ~ 23427204 (+) True nppb
XM_043246265.1 mRNA downstream 27353 23428915 ~ 23430926 (+) True nppa
XM_043247716.1 mRNA downstream 45629 23447191 ~ 23456783 (+) True mthfr
TU98063 other upstream 69032 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 933820 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 936782 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1090058 21963514 ~ 21964558 (+) False LOC122350768
TU97624 other upstream 1092771 21951413 ~ 21961845 (+) False G65995
TU98282 other downstream 230821 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 351006 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 351899 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 351899 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 354129 23755691 ~ 23783631 (+) False acot7

Expression Profile