RNA id: TU98171


Basic Information

Item Value
RNA id TU98171
length 305
lncRNA type sense_over
GC content 0.46
exon number 1
gene id LOC122350936
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23403713 ~ 23410561 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAACCTCAGCGCAGCAAGCGAGAACAATGTCAAGCGAGACAGGTTTTTGGGCTCCTGGTCCTTAGTAATGCTCACGGTTAACCGTTGTTGTTCTAGTACTGATACGGACAGTTTGGGTCAGCCATGCGGTGCTGAGTTACTTGAGTTTTGTGAGCATCTTCAATCCGATCTTGCAGAGTTTCTCAATGCTACATGGAGAGGTGAGTTATTGGATGCTAATGAAACCAGAGTTTTTACTCTAGCAGTTGAGAAGATATTAAACACATGGGGCGTCGGAGATGTCGATGGCGGTCTACTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251646.1 lncRNA upstream 165196 23231564 ~ 23239812 (+) True LOC122350913
TU98170 lncRNA upstream 166755 23237977 ~ 23238253 (+) True G66344
XR_006251648.1 lncRNA upstream 173984 23230043 ~ 23231024 (+) True LOC122350915
TU98064 lncRNA upstream 418050 22984040 ~ 22986958 (+) False mfn2
TU98062 lncRNA upstream 479240 22899436 ~ 22925768 (+) False wrap73
TU98176 lncRNA downstream 27497 23432809 ~ 23433745 (+) True G66350
TU98180 lncRNA downstream 28806 23434118 ~ 23435033 (+) True G66351
TU98273 lncRNA downstream 209904 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 215615 23620927 ~ 23623471 (+) True G66418
XR_006251574.1 lncRNA downstream 271122 23676434 ~ 23681832 (+) True LOC122350145
XM_043247681.1 mRNA upstream 3446 23054616 ~ 23401562 (+) True prdm16
XM_043247463.1 mRNA upstream 417846 22973995 ~ 22987162 (+) True mfn2
XM_043247808.1 mRNA upstream 436035 22956869 ~ 22968973 (+) True plod1a
XM_043246224.1 mRNA upstream 458854 22944210 ~ 22946154 (+) True LOC122350040
XM_043247502.1 mRNA upstream 480075 22915891 ~ 22924933 (+) False wrap73
XM_043247581.1 mRNA downstream 17360 23422672 ~ 23423662 (+) True nppal
XM_043246370.1 mRNA downstream 20596 23425908 ~ 23427204 (+) True nppb
XM_043246265.1 mRNA downstream 23603 23428915 ~ 23430926 (+) True nppa
XM_043247716.1 mRNA downstream 41879 23447191 ~ 23456783 (+) True mthfr
XM_043246658.1 mRNA downstream 77583 23482895 ~ 23579462 (+) False plch2a
TU98168 other upstream 253061 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 419424 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1284212 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1287174 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1440450 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 227071 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 347256 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 348149 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 348149 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 350379 23755691 ~ 23783631 (+) False acot7

Expression Profile