RNA id: TU98176


Basic Information

Item Value
RNA id TU98176
length 937
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G66350
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23432809 ~ 23433745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgttttatttttgactactgcattaaattaaaatcacctGAAAAACCGAAACGAAGTGAACAATATTACAAAGGGATATTGAGATCACCGATAATTTTCACGTAACATTTGCATATCGTTCATGAAGCATTTCTAACAGATGGATAGTGTTTAGTCGGCTCTCCAAACCTGCAGCGCACTTTGAATCGAGAAATCATAAAGTATGTTATAAAACATAcgttaaaaaaaagacaccgTGATAGTTCTgcatcataataaaaaaaaactgcaacagataaacaacattttaaagcataaattaaaacatttttgcagcaTATATTTGACAAAGTGTCcatcttaaataaatgaaataaaaaaaaattacagtgaaCAAAAATGTCAGGAATGTGTAGTATACAAATGTGCCTAATACTATTTAGTCTGCTCCTGTAAGTCCCTTGAAATCAAACCACTGTTAAATTATAACATGCTAATTACATGACTGCATATGCATTACATAAATCCCTGTAATTCAGTGACTTTATGGTGGTTTGATTAGTTCATTATTACAAACACACCCTGAGAACTTTTTTTCCCTGACAAAACAACGTCAAGAACGTCAGGGCATTTCAATGGAATGTGaaaagaatgtgaaaaaaataacaattgtatttttaagtaatgccacaattaaaacattattcacTTGGAATAAATGCCAAAACACTGGAATTGAATAACTTCACAATGGATTCCCAAATAGAGTAAAAGCGTCACTAGAAAAGGGAATAATcggaataataaaaataaaattgcatgaCTATATGAGACGAAAATCCATATGCATCTGATTGTTGAGCCCTACTAATGTTTCTTTAATGCCACATGCTGAATGGGTTTCTTTTCCTTAATTGACTGGGAGATCTTATGAAAATAAGTCACTTCTATGAAAGCT

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0022037 metencephalon development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98171 lncRNA upstream 27497 23405008 ~ 23405312 (+) False LOC122350936
XR_006251646.1 lncRNA upstream 192997 23231564 ~ 23239812 (+) True LOC122350913
TU98170 lncRNA upstream 194556 23237977 ~ 23238253 (+) True G66344
XR_006251648.1 lncRNA upstream 201785 23230043 ~ 23231024 (+) True LOC122350915
TU98064 lncRNA upstream 445851 22984040 ~ 22986958 (+) False mfn2
TU98180 lncRNA downstream 373 23434118 ~ 23435033 (+) True G66351
TU98273 lncRNA downstream 181471 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 187182 23620927 ~ 23623471 (+) True G66418
XR_006251574.1 lncRNA downstream 242689 23676434 ~ 23681832 (+) True LOC122350145
XM_043246265.1 mRNA upstream 1883 23428915 ~ 23430926 (+) True nppa
XM_043246370.1 mRNA upstream 5605 23425908 ~ 23427204 (+) True nppb
XM_043247581.1 mRNA upstream 9147 23422672 ~ 23423662 (+) True nppal
XM_043247710.1 mRNA upstream 22248 23403713 ~ 23410561 (+) True LOC122350936
XM_043247681.1 mRNA upstream 31247 23054616 ~ 23401562 (+) True prdm16
XM_043247716.1 mRNA downstream 13446 23447191 ~ 23456783 (+) True mthfr
XM_043246658.1 mRNA downstream 49150 23482895 ~ 23579462 (+) False plch2a
XM_043246655.1 mRNA downstream 49151 23482896 ~ 23583377 (+) False plch2a
XM_043246657.1 mRNA downstream 73746 23507491 ~ 23583377 (+) False plch2a
XM_043246656.1 mRNA downstream 101908 23535653 ~ 23583377 (+) True plch2a
TU98168 other upstream 280862 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 447225 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1312013 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1314975 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1468251 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 198638 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 318823 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 319716 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 319716 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 321946 23755691 ~ 23783631 (+) False acot7

Expression Profile