RNA id: TU98278


Basic Information

Item Value
RNA id TU98278
length 1640
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G66418
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23620927 ~ 23623471 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCCTTTACTTCCTCTTTCTGATCCTTTGAATCTTCAGCGTCTTGTGTATCATTAAGACACTCCCACTGGATACCAATGCTTACTAGCTCCCCCATGTTTTGCTTTGAAGTTTCCACAGGATATGTTTgaatgcttttgtcattttttgaaaCGTACTCTGGGTCAGTCACATCTGGAAACAACACTCCTACTGAACAAACTTCAGGACATGTTTCCATTTGGGCATTGGCTGTCTCTGGTTTTGCTATTGTCTCTTTGTCCAGCATTATCTTGGATGCCCTCTCAACTTCCTGAGCTCTGAAAGCTTCAAGATCTTGGTTGACTTGAGTTAATCGTGTCTCGAGAACCTGGATTGACTCTTGCTGAAATTTGATAGTGTGCTGCAGGGTGTCAATTTCTCGTTCTGTCTCACTTTGTAGCCCTAGAAATGATTCTATTACCCAGACTGCTGCATCTTCTGTAGCCACTCCAGTCTGAATTGCCTCATCGTGCATAACACTAATCTCAGTCTCAATAGCTACATGACTAACATCAACAGTAGCTTCAACAGCAGCATCCTTGACTGCTTGGCGATTGTAGACAACCACAGTCTCAATGGAATTGTCGCTGCCTACTGCTATGGATCTCTTTTCTACAGGAGTAATGGCTAGTTTTGCCTTTTTGTCTTGTTCATCACTTTTGCATTCTGGCTTTTTATTCCAAAGTGCCTGTGATGGTAGGTGGCAAGCTCCTGCTCTTGCCTCAGTTGAGACTGAGTTGAGCGTTGCATCAAGTTCCTCTGTTTTCTTTTGAAGTTCATTTGCCAGCCTTTCTTTTTCAGCCCGAAGCATGGCAACTTCTCTTTCTAGAACTGGTAGTCCTTTGACTCGCTCTTCCATCTCTCTTAGCTGCCTAAGTGCGGTGGCCATCTGTTCTCGCACTGTCTGGAGCTGTCCAGGAGGTAATGTTCCTGAGTTGGAGGCTGGCGTGCTCCTTCCAGACGTTTGAGGGCTTGCTTTGGTCCAGACACCAGAAAGGGGGTTCTGAACAACAGGTGATATCTGTAGCAAGTGGGCATCTGAAGCAAGCTGGGAAGAAGCTAGTGAAATGTCCCTATTAAATCCACTGGCTTTGGAACTCACTTTGGAAAGGTCAGACAAATTAGAGCCTAATCCGTTGGAAAACTGACTTTGCTCCTGTTGGAGCCGAAGACTAGTTTCAAAGAGTGTTCTCTCAACTCTAGGGTTACGtggtggaggtggtggtggCACTTTGGAGCAAGTAGGTGGATTGGGATTGATGACTGGTAATGGGGAGAGTGGTTGTGATTTACTAGGTGATGTGATGGGGCTTTGGAGAAAAGGTGGGTTAGTTTGGCCATTCTCACTGGTTGTTGAGGAAAGAGACTCTGTGGAGGTCCAGCCACTGGCCCGACCACCGACACTTAAATTCCTCTGATACCCACGGTCACCCCTGGATCCCCTCCGAGGGTTCACATTAGCCCTACGAATGCTATGTCCACTCTCTATTTCCTCAACATACTTGAGAAAGTCAAGGTCCAGCTGAAATCCGTAGGGAGTCTGTACTGAATAGGAGCCACCTTGGTCTGTTTCTTCTTCAGTAGAGCAATGAAAAGGGGCACTCAGATCTGCAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98273 lncRNA upstream 4245 23615216 ~ 23616682 (+) True G66416
TU98180 lncRNA upstream 185894 23434118 ~ 23435033 (+) True G66351
TU98176 lncRNA upstream 187182 23432809 ~ 23433745 (+) True G66350
TU98171 lncRNA upstream 215615 23405008 ~ 23405312 (+) False LOC122350936
XR_006251646.1 lncRNA upstream 381115 23231564 ~ 23239812 (+) True LOC122350913
XR_006251574.1 lncRNA downstream 52963 23676434 ~ 23681832 (+) True LOC122350145
XM_043247315.1 mRNA upstream 8424 23598728 ~ 23612503 (+) True dpp9
XM_043247316.1 mRNA upstream 8424 23598728 ~ 23612503 (+) False dpp9
XM_043247317.1 mRNA upstream 8424 23601937 ~ 23612503 (+) False dpp9
XM_043246659.1 mRNA upstream 23796 23586529 ~ 23597131 (+) True si:ch211-251b21.1
XM_043246995.1 mRNA downstream 8879 23632350 ~ 23634056 (+) True ndufa7
XM_043247538.1 mRNA downstream 11678 23635149 ~ 23656851 (+) True ppih
XM_043247539.1 mRNA downstream 11721 23635192 ~ 23656851 (+) False ppih
XM_043246391.1 mRNA downstream 34610 23658081 ~ 23664434 (+) True ybx1
XM_043246392.1 mRNA downstream 34611 23658082 ~ 23664434 (+) False ybx1
TU98168 other upstream 468980 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 635343 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1500131 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1503093 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1656369 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 8912 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 129097 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 129990 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 129990 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 132220 23755691 ~ 23783631 (+) False acot7

Expression Profile