RNA id: XM_043245999.1


Basic Information

Item Value
RNA id XM_043245999.1
length 2902
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122349879
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2425319 ~ 2428603 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTCTCACCTGACTCCCTTGTTTGTATATTTCCTGCTTTTCTGCGTTACTCGTTGTGTAACGTATGCCCGTAGGCTATCATTTGTCTGATTGCTTTAAACCTTGTCGTTTGAATTTGTCCGACTGCCCGTGGAGCATCTTAAGATAAGGATATAGGGTACCGCATGTTTTAATTTCTACATTAATAGGCCACTGCGTGGATCCGTACGTTTCACGGGTCCGTCAACAAGACAAATCGCCTGGGACGGACTGCGAGACTCCAAGAGCATCGTTCATGAAGTTTTAGAAGATTTTTTTAACGTCAGTGAAACCGAAACTGGACGTTTGTGACCCGATGATGCTGGCGAGCAGTTTGCTAAATGTAGTGTGAAGGATCACATGCTTCTTCTCAGCATGCGCATGCACGCTTCATCACATCTGTCTGGGGGCACGCGGCGTCGATGTGGGTTAGATGGTTCGTTCTCACACGAGACTGATCAGATCTTCGCGTTTTTGCCTTTAATTCAAGTAGAGTTCGGACATGATCGGAAAGGTCCTCAAGCTGGGATGAGCCGCTCAAAGTTCAGCAGCGCCGGGCGTGTCTGAGCTCTATCAGGTTGCAAGAGCAGgctttcattgtttgtttgtttttttaaaagagtaattTCCGACCTGAAACTTCTCTACTCTGAAACTTCCGTATTTCGGCAAACACTGTGTAGTCTGGCGCTGAACACGTTGCCATCAAATGCGACGAAGAACTCCTCGTTTCTTTTAATCCTTGGCTCTCAAAAGCGATCAGAAGATGTCAAGCACCAATGGCTCAACGCTGTGTCGTGTGGGTGTAGTAGTGACTTTGGCAGGTGTCATCTCTATGGCCATAATGTTTTCCCGGTTCTCACCTTCACGCAACTGTCCACCGCCACCTCCTAAACCCAAAGTAAACTCGGTACAAAACTGTGCCAAAAGCAGCAACTCTGTTAATGATATAGCGGAAAAACCTATAGTTCTGTTATGGGTTTGGCCTGAGAATTACAGGTTTGATTTCAGCGACTGCAAAAAGTTTTACAATATTGATAATTGCCATCTGACGGATGATAGAGGTCTCTACGACGAAGCAGATAACGTAATCGTTTATCACAGAGACATTCAATGGGATCTGTCCAACCTTCCTCCATCTCCTCGTCCTCCGTTCCAGAGGTGGCTTTGGTTGCATTTGGAATCACCAACCAACACCAAAAGGATACCGGGTCTGGAAAACCTGTTCAATCTCACTCTCAGCTACAGACAGGATGCTGATATTCCCGTACGGATGAGGTTGATCACCAGTAAGAAACCTAACAAGGATTTTGTGATTCCCAAAAAGGACAAACTGGTGTGCTGGATCGTAAGCAACAACGATCCTTCAACTGGTGTTGACAGGAGGAACGATTTTTTCAGAGAATTCAGGAAATATATCCGAGTGACTTTGTTCGGAAAGGCTTATGCAAGATTCCTGGATTATAAAGATTACTATCCAACCCTGGCTAGCTGCAAATTTTACCTTGCCTTTGAGAACTCCATCCACAAGGACTATATTACTGAGAAGATAAACGGACCGCTTGCAGCAGGGACCGTCCCTGTGGTGTTGGGCCCTCCGAGAAGAAACTATGAAAACTTTGTTCCTGCTGAGTCCTTCATTCATGTCGATGACTTCCCGGATGCAAAGTCACTAGCTGAATATCTGCATCAGCTGGACAGGGATGACAATGCATATCAGCAGTACTTTAACTGGAGGAAACATCTCACTCCAAGTCCTCATTTAATATTACAGACACAAGAGTTTATTCTGGCTATCTGCACTGCCTGTGATCATGTAGCACGACACAGAGAATATAAAGAAGTTCATGATCTCTATGATTGGTACTTCAGATAAAGTCATCTCAGGTTTCACATTTAAGtgaattaataataacttttatggATATTATCACTTGTGTTTGTATCTTTTCATCTTCAAGtcctttttaaatcactttttgaTCATAAACGGAAAGAACAAATGCTGTAACTTTATGGGAGCTGTATTTTCCCTCTGATATTGGTGTTGGTTGGCTGtttcttaaatgtaaatgacagaatgtttatcAAAATCACTTTTGCAAAGTCATGTACGACAATAATCTACTTGTTTGTACGTGTATCTTATCAGCGACACTATTTATGATGTTGTCGTGTAAATTCGAATTACATGACTCTAAGGCAGCGTCTTTGAAACTGAAACCTCAACTATGCACTCCTAAATTTATTATAGCCTTAATATacaattcattttttcttttattgaattatatttaCGACATAGGTGAAATGTTTAAACGCTTTTGCCTCCAGCTCGAAAGAGGGCGCCAGAACTTCGAGTCAAACAGGAAGTCCGACGTCATGACGTACGCAGCGTCGGTGACGTCACGTGCGTGAAGCGTGTTTTTCGTACTACAGAAGAGATGTTCTGGATTAAGATCGGtccatttcagttttattttaatccagGAGtgcagtattatttttaattcgtCTGTAAACTCGTCGTCCGTTAGTTTCATACGGTTTAGAGTTTCGTTTTCTTCAGATGAATTAAACCCCGTCGGAAATCCGTGGCTTAAAGGTTTGTATCTTTTGTTAAATGTTGTTGAATTGTTAGATTTGGTTAAATTTCATGCAGTATTTTAATGCAGAAGCCCCGCGAGCTTTCATATTCAATCATAGTGTCTGAGTTTATTTAAGGTATTAGTTTATTCAGCCATAAACgagcaacaaaatattaaagtgaACTCGGTGTCTTTTTTAAACTGTAGCCAGGTtcatacacatgcatttttcaGTCCAACAACTTTCGTTCCTGTTTTCGAGATGTATCATTTCAATAAACAATTACCaacctta

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89255 lncRNA upstream 3102 2408095 ~ 2422217 (+) True G60342
TU89248 lncRNA upstream 81150 2343936 ~ 2344169 (+) True G60335
TU89239 lncRNA upstream 221009 2192957 ~ 2204310 (+) True G60328
TU89233 lncRNA upstream 260077 2163307 ~ 2165242 (+) True G60323
TU89206 lncRNA upstream 263275 2159314 ~ 2162044 (+) True G60297
TU89288 lncRNA downstream 92227 2520830 ~ 2524134 (+) True G60347
TU89289 lncRNA downstream 92227 2520830 ~ 2523944 (+) False G60347
XR_006251673.1 lncRNA downstream 128427 2557030 ~ 2559048 (+) True LOC122351006
XR_006251674.1 lncRNA downstream 128427 2557030 ~ 2559048 (+) False LOC122351006
TU89315 lncRNA downstream 181714 2610317 ~ 2612227 (+) True G60361
XM_043246144.1 mRNA upstream 93548 2323599 ~ 2331771 (+) True lhx2b
XM_043246143.1 mRNA upstream 93548 2323603 ~ 2331771 (+) False lhx2b
XM_043246145.1 mRNA upstream 93548 2323603 ~ 2331771 (+) False lhx2b
XM_043246164.1 mRNA upstream 222222 2170511 ~ 2203097 (+) True crb2b
XM_043246150.1 mRNA upstream 272928 2139230 ~ 2152391 (+) False sh3glb2a
XM_043245996.1 mRNA downstream 3291 2431894 ~ 2464382 (+) True pxnb
XM_043245993.1 mRNA downstream 20907 2449510 ~ 2464382 (+) False pxnb
XM_043245997.1 mRNA downstream 20907 2449510 ~ 2464382 (+) False pxnb
XM_043245994.1 mRNA downstream 20907 2449510 ~ 2464382 (+) False pxnb
XM_043245998.1 mRNA downstream 20907 2449510 ~ 2464382 (+) False pxnb
TU89218 other upstream 385483 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 389339 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 392256 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 407799 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 506948 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 1420011 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1496258 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1620016 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2675967 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2675967 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile