RNA id: XM_043246015.1



Basic Information


Item Value
RNA id XM_043246015.1
length 751
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC122349890
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21230754 ~ 21232347 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGAGTTTTTGATGGTCAGCCTGTCCCATCTGAAGGAAGAGGGCGAGCTTCTGCGGAGCTACTGGCCAAAATACACCTGTCCTGTGGCTAATATGGAATTCCAGCTCAACCGTCTGCGCACCTGTAACAGCTGTGGCTTCCAGAGGAGCTTCAGAGAGGATTACAACTACCTCTCTGTGGTCATCGGTCCTCGAGGATGCCTCATAGACAGCCTGCAGCAGTACTTCAAAaGATCTTCGTTTGACTGCTCATGCAGCGAGTGCGCCGGCTCTACAGCCTCTGAGGAGCTGGAAGTAATTGTCCTTCCACGcatcctggTGCTTCTGGTCATGCGTTTTGATATCGCATCCTCAATGTCCAAGCTGAAGGATCGACTGAAAGTCCCAAAAGAGTTTTCTCTGTCCTGCAGCACAGgTGGAAGCATCAGACAGCAGCTGCACACAGTACAGACTATCTGCTGCTGTGTCACATCTGGGCAGCAGTTTGTATTGTGGGCACTACATCAGTCACATCCCTGACCTCAGTGGATCTGGATGGCTGGAATGCAGCGACTCATCCATCAGAAAATCCAGCTGGTCCAAAGCCTCATGTAACATCGAGAGAAACGGATACATGCTCTTCTATGTGAAGAGCTGAGCAGAAGCTGATTGATGATGCAGTTTTGAAGAGGAAAGGAAACACTGCAGAGATGCATTCTGGAGAGATCTACATCAGTGTTTCACTGCAAGAAAAGCAGACTGCtcctaataaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97337 lncRNA downstream 128202 21100084 ~ 21102552 (-) True G65835
TU97278 lncRNA downstream 213519 21016472 ~ 21017235 (-) False gna14a
TU97277 lncRNA downstream 215818 21013424 ~ 21014936 (-) True G65793
TU97275 lncRNA downstream 218620 21008975 ~ 21012134 (-) True G65792
TU97226 lncRNA downstream 272796 20956934 ~ 20957958 (-) True G65764
XR_006251554.1 lncRNA upstream 13738 21246085 ~ 21247187 (-) True LOC122350047
TU97484 lncRNA upstream 117103 21349450 ~ 21352952 (-) True G65896
TU97486 lncRNA upstream 121415 21353762 ~ 21355716 (-) True G65897
TU97487 lncRNA upstream 121415 21353762 ~ 21355716 (-) False G65897
TU97458 lncRNA upstream 140896 21373243 ~ 21374591 (-) True G65871
XM_043246027.1 mRNA downstream 47065 21182724 ~ 21183689 (-) True LOC122349897
XM_043246871.1 mRNA downstream 100980 21106860 ~ 21129774 (-) False klhl22
XM_043246870.1 mRNA downstream 100981 21120589 ~ 21129773 (-) False klhl22
XM_043246869.1 mRNA downstream 100981 21120589 ~ 21129773 (-) False klhl22
XM_043246874.1 mRNA downstream 100981 21120589 ~ 21129773 (-) False klhl22
XM_043246358.1 mRNA upstream 155344 21387691 ~ 21389140 (-) True nkx3-1
XM_043246071.1 mRNA upstream 168230 21400577 ~ 21402547 (-) True nkx2.7
XM_043246073.1 mRNA upstream 184425 21416772 ~ 21432121 (-) True stc1
XM_043247462.1 mRNA upstream 274432 21506779 ~ 21513320 (-) False LOC122350763
XM_043247461.1 mRNA upstream 274432 21506779 ~ 21512747 (-) True LOC122350763
XR_006251697.1 other downstream 777623 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 1797619 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 1797619 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 2028377 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 2191203 19030987 ~ 19039551 (-) False LOC122350102
TU97752 other upstream 539121 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 552357 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 781626 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 796385 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 832551 22064898 ~ 22068757 (-) False LOC122350973

Expression Profile