RNA id: XM_043246065.1


Basic Information

Item Value
RNA id XM_043246065.1
length 2433
RNA type mRNA
GC content 0.46
exon number 5
gene id si:dkey-90l8.3
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20690830 ~ 20696690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAAGTGTACGGCTCCGTCGCGTCACGCCTGTGATCATAAAAGACCCGCGGCGCTCGTCTCCGTCCGGCAGTGCGCTTCCTCCGGTGCTCGTCCGCTCTTAGACGCGTCCCACGGAATAAACACTCGCTCTCGGGCTCTGCTGCGGAGCGCCGCGCGATGCGACGGACCCACTAACTCTGCCCTGTCCAGCAAAGAGACGTGAACCGAATCGCCGTTTCGGTACAATGTGGGCGTGAAGAGGAGCGTCACGAGAGCGCGAGTCTCGAGGTGGATAACTTCAACTTCGTACGGCGTGAGAACCCACCGGAGAACCGAAGCTCTTCAAGCCGCAGCTATGGTGAACAGCCAGGTCTCAGGCGGCGTGTGTGCGTCCAGGTCGTGCGCAGGCTGCGGGGGTCGAATCGCCGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACGCGCTGCCTCAAGTGCTCGTGCTGTCAGGCTCAGCTGGGAGAGATCGGGACCACCTGCTACAGCAAGGGAGGCATGATCCTGTGCAGAACAGACTACATCAGGCTGTTTGGGCACACGGGGGCTTGCAGTGCATGTGGTCAGTCCATTCCTGCCAGTGAAATGGTCATGCGGGCACAGGGAAACGTCTACCACCTAAAGTGCTTCTCTTGTGCAACGTGCAGAAACCAGTTGGTCCCCGGGGACCGATTCCACTACGTAAACGGCACCATATTTTGTGAACACGACCGGCCAGGATCCGCGCTCCTTAATACTCACCTGCAGAGCAACCCAGTGCTACCGGACCAGAAAGTTTGCTGAAGGACTCGCGGTCTTCTTCGCCCCTTCCCATTCTCCTCTCTGTGTTTACCCTCCAGTGTCCTTCTCATCACAGCTCTTCACTCAGACATCCTCCAGACACTCCTCCTTTTTGACGcacttatgtttttaaatgaaaaagtatctTTGAGCGGGGGAACGAGTTTGGGCTGAGAGCGATGGAAGCATTTCTTTATATCTGACTTCGTATCAAGCTGTGGTGGATTCTGCAGTATCTCTCTTTGTGGGTTCCCTGAAAACAGAAGTGACTTCTATTTTCTCACAGGATATCCTGCCTCTCTCACATCTAACCTCAGAGAGGAGGCTTCGTCTGAAAGCAATGTATGCTTTTTCGAGTCGAGAAACTGCTTTCACAACACATTTTTGACATATATCCAGTTTAGAAAGGATATTTAATCATGAGCAAATGCATCGAGAATTGTTTGGGACTTGAGTCCATTACATAACAGAGactgatgactttttttttgtttgaagtgATGGTAAACCGTGCACTCTAAAGATGCGGCCACAGCGAATTTAAGCAGTTTTGCTGTATAAAAATATGCCCGTTGTCAATACTGTAGCGGTGTATTAACACAGCAAGCACTCACAAATCAGTTTCAAACCCTTTCCAATTGTGTTGAATTTTCGAGAGCAATTTGAGCATAAGCAAGTTCGTGTAGAAACGCTAGCCGCGTTTCCATTACCATTCAAATTGCGCAAATTACAATTGTGAAATGTTTACTTGTTTACCTCCTTTCCATACAGTTTACTTTGCTTATGGCCACTCGGCTGAtgcttgtgtttatttcagCAACGGCAGGCAGTTTTCTGAAGTATCTTTCCATGCTGCTTCTGTAAAGATACACTCATACGCCtccttttgaaataaatgcatcaaatcTCACCAAAAACTGTTGCCATGACTTATCACGAAAGGCGAAAGGGTTACGTTTCAGTCACATAACACTGGTTAATGGGAACGCCATCATTTCTCAATACTTACTTaacaacatttataaaatatcgcTAAAATGTTGCGGAAATCTGTAATGGAAGCGCTGCTAGTTTCGACCTCATGCAAAGTTGTAACCTATTGACCCTTCGCCAAGAACTGATTTGACAGGCGATCCAGCCGGTCATAATGCTGAATCTTCCAACATATCAGTAGATTAACTTCTGCAgtctcaaattaaaaaaaaggcttgTACTGACATCTAAATAAAACACGTCCTGATGGTCATTCATGTATTATATGACGCTTTAAAAGGTATCAAAAGAGGTCTTTTAAAGACATAGCAGTAGTAACTAAGGGGGGCAGGCTTTTGCAAAGGGCCAAATTCCAAACAACCACAAATTTGCACCAAGAAATAAATGTGACACACTTTAACACCAGAAAAGTGCATTTAGAAAGTAAACGGGGTTTGTTgcgatttttttacatttttttttatgctgactAATGTCAAAAACACATCTTTCGGACATCGTTCAGGGCGTAgaattgtaaatatgtttttataccAGTACTCTCTGTAAGAATTGTTGAATTATCTGCTCAACATGTGATGTCTATTTAAGGTGCAATTATCTAATAAATGGGAAATACAACAACCCAGCCGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97135 lncRNA downstream 79907 20610562 ~ 20610923 (-) False G65704
TU97136 lncRNA downstream 79907 20610562 ~ 20610923 (-) True G65704
TU97126 lncRNA downstream 120537 20567158 ~ 20570293 (-) True G65697
TU97122 lncRNA downstream 130859 20559631 ~ 20559971 (-) True G65696
XR_006251535.1 lncRNA downstream 184857 20497495 ~ 20505973 (-) True LOC122349883
TU97155 lncRNA upstream 22250 20718940 ~ 20721810 (-) False LOC122350336
TU97154 lncRNA upstream 26576 20723266 ~ 20725454 (-) True G65717
TU97177 lncRNA upstream 184332 20881022 ~ 20881433 (-) True G65732
TU97172 lncRNA upstream 189534 20886224 ~ 20892629 (-) True G65728
TU97173 lncRNA upstream 189534 20886224 ~ 20890353 (-) False G65728
XM_043246940.1 mRNA downstream 26301 20662169 ~ 20664529 (-) False bcl2l16
XM_043246941.1 mRNA downstream 26301 20662169 ~ 20664529 (-) True bcl2l16
XM_043247883.1 mRNA downstream 76533 20592465 ~ 20614297 (-) True adgrd2
XM_043247885.1 mRNA downstream 76533 20596233 ~ 20614297 (-) False adgrd2
XM_043247884.1 mRNA downstream 76534 20592465 ~ 20614296 (-) False adgrd2
XM_043248007.1 mRNA upstream 3333 20700023 ~ 20707196 (-) True ccn1l2
XM_043246721.1 mRNA upstream 22333 20719023 ~ 20723155 (-) True LOC122350336
XM_043246719.1 mRNA upstream 51749 20748439 ~ 20756847 (-) True stambpb
XM_043247158.1 mRNA upstream 61118 20757808 ~ 20762487 (-) True tgoln2
XM_043247598.1 mRNA upstream 75003 20771693 ~ 20822051 (-) True tcf7l1b
XR_006251697.1 other downstream 237699 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 1257695 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 1257695 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 1488453 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 1651279 19030987 ~ 19039551 (-) False LOC122350102
TU97752 other upstream 1074778 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 1088014 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 1317283 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 1332042 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 1368208 22064898 ~ 22068757 (-) False LOC122350973

Expression Profile