RNA id: XM_043246148.1


Basic Information

Item Value
RNA id XM_043246148.1
length 1345
RNA type mRNA
GC content 0.59
exon number 12
gene id sh3glb2a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2139230 ~ 2152391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGGCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGGCCGTCCCAGACTTTCAAGAGACGAGGCCGCGTAATTATGTGCTGTCTGCTAGTGCATCTGCGCTTTGGAACGAGGAGCTTGACAAAGCGGAGCATGAACTGCGCGTCGCTCAGACGGAGTTTGACAGACAGGCCGAGGTCACCAGACTGCTCCTGGAGGGCATCAGCAGCACGCACGTGAATCACCTGCGCTGTCTGTGTGAGTTCGTGGAGGCGCAGGCCATGTATTACAACCAGTGCCACAAATACATGCTGGAGCTGCAGAGAGAGCTGGGCAGTTGCAGCGGAGACATAAGATGCCCCGACTCGTCAGATGTGGGTTCCCCCGCGGATCCGTCCGCCTTCCCGTCGCAGAGCTCTCCTTCCGCGCTGGAGACGGACGCTCTGCAGATCGAGGAGGTCCAGCCGCCGGCCAGCGGCACGCGCACCGCCAAGGTGCTGTACGACTACGACGCTGCGGACTCCAGTGAGCTCTCGCTGAGGGCCGATGAGCTCATCACCGTGTACACAGTGCCTGGAATggactctgattggctgattggaGAACGAGGAAACCAGAAGGGGAAGGTGCCTGTTACATATCTGGAGCTGTTGAGCTAAAGAGagaacagacacagacacacacagacagacacagacacacacacacacacacagacacacacacacacacagacagacacacacacac

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89180 lncRNA upstream 25897 2041502 ~ 2113333 (+) True G60279
TU89181 lncRNA upstream 94580 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA upstream 94580 2041502 ~ 2044650 (+) False G60279
TU89184 lncRNA upstream 94580 2041502 ~ 2044650 (+) False G60279
TU89178 lncRNA upstream 94580 2043191 ~ 2044650 (+) False G60279
TU89205 lncRNA downstream 1081 2153471 ~ 2156394 (+) True G60296
TU89206 lncRNA downstream 6924 2159314 ~ 2162044 (+) True G60297
TU89233 lncRNA downstream 10917 2163307 ~ 2165242 (+) True G60323
TU89239 lncRNA downstream 40567 2192957 ~ 2204310 (+) True G60328
TU89248 lncRNA downstream 191546 2343936 ~ 2344169 (+) True G60335
XM_043247803.1 mRNA upstream 5299 2106390 ~ 2133931 (+) True fam102aa
XM_043247804.1 mRNA upstream 5299 2106392 ~ 2133931 (+) False fam102aa
XM_043246917.1 mRNA upstream 35324 2096159 ~ 2103906 (+) True naif1
XM_043246919.1 mRNA upstream 35324 2096166 ~ 2103906 (+) False naif1
XM_043247302.1 mRNA upstream 67561 2069818 ~ 2071669 (+) True si:ch211-51h9.7
XM_043246164.1 mRNA downstream 18121 2170511 ~ 2203097 (+) True crb2b
XM_043246144.1 mRNA downstream 171209 2323599 ~ 2331771 (+) True lhx2b
XM_043246143.1 mRNA downstream 171213 2323603 ~ 2331771 (+) False lhx2b
XM_043246145.1 mRNA downstream 171213 2323603 ~ 2331771 (+) False lhx2b
XM_043245999.1 mRNA downstream 272929 2425319 ~ 2428603 (+) True LOC122349879
TU89218 other upstream 99394 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 103250 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 106167 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 121710 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 220859 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 1696224 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1772471 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1896229 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2952180 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2952180 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile