RNA id: XM_043246156.1


Basic Information

Item Value
RNA id XM_043246156.1
length 4384
RNA type mRNA
GC content 0.45
exon number 8
gene id rnf165b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 713366 ~ 724970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATATGATCCCGCTgaatgtacattatttattcatccgtTTACAGTCTGTGTTCATCAAAGAGAAGATCTGAAGGATGGTGTTAGTTCATGTCGGATATTTGGTTCTTCCTGTCTTTGGCTCAGTGAGAAATAGAGGATCTCATTTTAACAGGCATCAGCACAGTCATGCTACCTCTTGCCGGCATTTCCACGTAGGCCCCCAGGCCCAGATCCCTGTTGATTTCCCAATGCCCCATCCAGGACAATCTCAGACGGGAATGAGCCATCACCTCGGCCCTGCGCACCAGCCAGCCGCGGCGTTACATCCACCCCTCAACCACATACCAGCACCACCGTTCCAGGACATCCCGGCCCCGCCCTTCCTACCTCAGGCTTTACACCAGCAATACCTCATTCAGCAGCAGATCCTGGAGGCCCAGCACAGGAGGATACTTCCACAGCCCAGCAGACATGCTCCAGACCGAACCCTTCCCCACCCGCAGACGCTGCGGCCGCCATATGAATACCCAACATCCATTCACATTCCCGCACCTCCGCCGGTGCCGCAGCAGCCACGCTATCTCGCTGAAGGAACAGACTGGGATCTGAGTGTGGATCCAGGCCTGCCGCAGTACCACGTCTCTCCCCTCACTCAACATTATCAGCATTACCTGACCTCTCCACGACTGCACCACTTCCCCAGGAACACCACCTCAGCACAAGTGGTTGTCCATGAGATCAGAAACTATCCATATCCTCAGTTACATCTGCTGGCTCTCCAAAGCCTCAGTCCTTCTCGTCATGCGTCTGCCGTGCGGGAGAGTTACGAGGAGCTCCTGCAGTTGGAGGACAGACTGGGAAATGTAAACAGAGGGGCTGTGCAGACCACCATCGAGAGGTTCACCTTTCCTCACAAGTATAAAAAGAGAAGACCTCTAGAGCTGAAGATTGGCATGGATGAAGAGGAGCTCGACACGGATGAGAAATGCACAATATGCCTCTCGATGCTTGAAGACGGAGAGGACGTCAGGAGATTACCCTGCATGCACCTCTTCCATCAGGCTTGTGTTGACCAGTGGCTGGCAACCAATAAGAAGTGTCCCATCTGCAGGGTAGACATTGAGACGCAGTTGTCCCCCGATAGCTGATGTCTCGTGTAGCACTAGCTAGAAGTCCTATTGTCTCTCTTCGTCCCCTCGTGGGTACTTTGCCAAATGTGTGTCATCTCCATCACCTCTCACCTCTGACCTTTGCCTTCTGAGCCAACTGACGATGTAGAACAGGGAAGAAGATAAGCGCTGAAGTGGAACCTGGACCGCGTCGAGCACGTGGAGAAGAACGAGTCTGTCGATGAAGAGGGTTTCAGTCAAAGtgctctgtatgtgtgtgtgtttaggtcgGCGAATGCCGCTCTAAAGCGATCTCAAATGAAGACCAACCAAATGTTCTCAGTGTTCAGTAGGTCACGGATGAAGCATTACAGCATGAACACCACAAAGTCCGACACATTACGCGTGGTTGGTCATGAACTTAAACGTAGTTGAACGAATcatttgtgaaacaaaaaacaaacaaaaacaaaaaaaacaaaacacaacggGAATCAAAGTCATTAGCGAAAGAGAGAAGCGCGAGAGTAGAACAATGAccctgtgtttaaaaaaagctctGTCGTCGTGTCTGTAATTATCGGAGGTGATGCTTGACGTCCGTATGTAACCGTAAGGCCAGGCTTGATATGAACCGTGACAGTCCGCATTATGTGCTCGTGATGCCTCCGAAACGTATCCACCAAATGCATGTTGAAGCGAGAGGCCGGGGTTCTTCTGACGAGAGGTCGATGTGCATGAGGACGTTTCCCGCGCGATATTCTACTAATCCTGAAGACACTGTGTTCTCGATGCGTCTCCGAAGTCACTACAAGTGAAATATGTACCTTAATGCCTGTAGCACAAGCACACGTTGAATAGTAACGGCATAACTCCGTGTTTCCATTCGCTCTGTGACTCGTGGTCTCGCTTGGTCGTAAAGCAGCATCTGTAGAGTCATAACGTGCATGAAACCTGTTTGCTGCCATTTCTAGAGGACATGACAAGGGAGTAAAGCCATTCGTTTTATAGAAACCAAACATAACTTTTCTAAGCTGTACTTCATGATCACTCTTCCTCGtttgatttcttcttttttcctacTGTTGCCAGCCTGTGTGCGGGCCTGGCACAGCTTCTCGACATAAGTAGCTGCAAtgctggaaaaaacaaacaaacaagttatTTATTGTCGTCTTAATGTAGTTAgtggttatttttgtaaatgcactCACTTTCTGATGAGGTCGTGTGATTGTTTCTCTTTCCCTGCTTTTGCATTTGCACTCGAGTTTCCTTGCGTATCGTGCActccatccaaaaaaaaaaatgaaaaagaaaaaagagagaagaaacgTGAAAAAAACCAACAAGGGAACAGACTTTTTAACAGCACAGTTTCTTTGCGTAACGCTAGTCGTCGCCTCACTGACCACTTTAAATGTACGTGACTGTTTTTTCGTAGCATATCGGATGTCTTTGTAGTGCGTTCGGCGAATTAACGTTGCTTTCGAAACTTTTCCCGAATTCAAGCGTTCAGCTGCTTGGAGGCCAAGAAGTTGGAAGCGTCTTCACCGTTTTTTGTAGCGTGTCAGTGAGCGTCCGCCGCGTGACCTTTCCCTCTCATCGTCCGTCTGCGTTTTATAGTTTACACATGATATTGTGCGTCGAAATGCCTTAAGTATTTAACAATCATAATTTATGACTAACTTTACCTACTATGGGTGCGTATTTAAGTTCTGAACTAGTATCGCAATGTAATCGgtcggtttatttatttacgtcaGCATAACGTGTGTATAAATACCTCATTGTGCTATACTTTAATGGGAGTGCTTTGCATGCGGTTGTACTTTAAGGGGCGTAAGTGTCAAAACAAGCTAAACAACCCCCTCCCCAGACCCCGACCCCGACCCGGACCCCGACTGAGGGCGTGCTGAAATGTGCTAGTATGTGGTGCTGTAGTTTTTTTGGTTACATTCCATTAATGCAATTTCAGCTGTGAGCTCGTAGGCAAACTGTTCAATGGACTGGAATCGTTTTGCATGTCTCTCCTGTTTTTTGCACTCTCGGCTTTGCTGCCCTCTCACTGGCATCCTGCGAACGTCGCCCGCTCGTCTCGTCGCTCTGAACCGAGCCGGCGATTCCAGGCCGTGaatctgttttcagtgttttcagtaGTGAGGAGTGAGTTCAGCGCTTACTGTGATTGATTATAGCTGCTTGTCTTGTGCCCAACTTTCGATTACAGCCGGCCATTGTGTGCTGTATTTTCAATCGGGATTTAAAGTGATGCTTATTTTTCCCCACGAGTAGCAGATTTCCTTTACTCTACGTATCGGTACTTCACAAGAGGGGCTTTAAATGTCTGAATGCAGGTCGTGTTTTGGTACATTCTAGCGTAGCTGCCGTACGTGTGTCATATTTTCGCGATTTTAGCGCGTCAGGTTATATAGCTTCGATCCCCCAAATATCAATCTGCCAATACGGTGTCGTGTTTTACACTAGCATCGGCCGATACGGCAGACGACTCTTATTTCCGCCGAAATAAGCGTTTTTGCTGCCATGCGGAACACCTGGAATACTCGTTATTTTCTACACACTTAGAAATTGTTGCGCcgatgtagaaaaaaaaaaaaaaaaatgacaaaaaaaagaacaatggctttatattttatgatttgtGTTTCTAGCCTGTGTAGCCTTAAAGTCTCTTGATTTGATCCATCTCTCCAGCAGATTTTGGACATAAGCAATAGTAGTATCATGTTTCGCTAACAGACTGAACCGTAGATCCTAAAGCACAAGCTCTGTAATGCATGTCTTTCTCAGGTTTTAATATGCGTATGAGAATGGATacatatgttaaaatattttaccataaatatttctgatgtttttctgctgctgacataaaaagaaaaaaaaaacaaaaaaaaataaataaatagttgaaTAACCTGCCAGTGAAAGGGAAGTGGCTCTTTGTATAAGACACTGCTGTGTGCTGTTACTGCGCAATGTTTTCTGACATGAATATTTTATAGCTCAAgtagaaaaatatgtattgacAATATTTAAGCAATAGCTTGGTGATTATAATGTATGATAACTAGATAAGTGTATattgcgtttaaaaaaaaagaaaaaaaaaagaaaatcttagaTTCACTTTTGGTGgattttgtactgtatttattactAATGATGATGCAAAAAGTTGCATAGCTTAACccaaattttctttcttttttaatttcttgtcTTGTATATGACCctttttgtatgtgttttttcaaataaaatgtcgAAAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17821 RNF165; E3 ubiquitin-protein ligase RNF165

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88829 lncRNA downstream 52268 660435 ~ 661098 (-) True G60036
TU88788 lncRNA downstream 95894 615281 ~ 617472 (-) True G60016
TU88300 lncRNA downstream 161484 514767 ~ 551882 (-) True G59739
TU88322 lncRNA downstream 165455 545919 ~ 547911 (-) True G59750
TU88239 lncRNA downstream 476709 236074 ~ 236657 (-) False G59688
TU88767 lncRNA upstream 294 725264 ~ 727029 (-) False LOC122349987
TU88853 lncRNA upstream 7870 732840 ~ 734242 (-) False csgalnact1b
TU88859 lncRNA upstream 30654 755624 ~ 756643 (-) True G60061
TU88877 lncRNA upstream 91491 816461 ~ 820768 (-) True G60079
TU88887 lncRNA upstream 107757 832727 ~ 835131 (-) True G60085
XM_043247533.1 mRNA downstream 82221 630354 ~ 631145 (-) True fabp1b.1
XM_043246783.1 mRNA downstream 102452 607450 ~ 610914 (-) True sprb
XM_043246776.1 mRNA downstream 111522 588798 ~ 601844 (-) True lzts3b
XM_043246782.1 mRNA downstream 126720 581029 ~ 586646 (-) False ubox5
XM_043247330.1 mRNA upstream 7823 732793 ~ 739372 (-) True csgalnact1b
XM_043246162.1 mRNA upstream 18223 743193 ~ 747336 (-) False spinb
XM_043246161.1 mRNA upstream 18223 743193 ~ 747326 (-) False spinb
XM_043246160.1 mRNA upstream 18223 743193 ~ 747326 (-) True spinb
XM_043246163.1 mRNA upstream 18223 743193 ~ 746684 (-) False spinb
TU88755 other downstream 142393 565886 ~ 570973 (-) True ccl27a
TU88852 other upstream 2219 727189 ~ 731620 (-) False LOC122349987
TU88902 other upstream 410431 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 415728 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 626940 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 851835 1576805 ~ 1578744 (-) True G60220

Expression Profile