RNA id: XM_043246189.1


Basic Information

Item Value
RNA id XM_043246189.1
length 1601
RNA type mRNA
GC content 0.38
exon number 9
gene id LOC122350007
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3828509 ~ 3834154 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGCTTTCTACATTAATATCAGCATGTTTTAAGACTCGGTCACTATTGTTTGTGTATCTCAGACAGCTGTAGTCTCCAATCTATCACAGCATGAAACAGCTTTATATTGGCCTTTTATTGGCCCTTCGGTCAACTTTTGCTCAAACACCCTACTGGAGGAACGTGTATTACCAGACGCAGACTCAAGCCCCCTTTTGGAGGAGCCCGTATTACTATGCATCAActcAAACACCCGACTGGAGGAATGTGTATTACCAGACACAGActCAAACCCCCTTCAGAAGAAATGTGCATTACCAGCTTCAGACTCCATTTTGGAAAATTCAGGATGGACATCATTCAGATGTTCCAGTGCCCAATATTACAGTGTTCAGGCAGATGGAGGTCAGAGAGCGCATGATCATCATGTGTTCATTTAGAAGGAGGCTCACTGAGAGCTCTTTCCAGCTGTCACTGAAGAGTGAATACAGCTATGCCTTGAAGAACCCactgtgctttttaaatgacgtgtgtgtgtttgatgtgaaAATTAGCCCACCGGTTTCCTTCACCTGCATACACCAGATTAATTCTGTTGTGAACCGTCAGAGCGAGACCTACACCTACAGCCAGCCAGattttgttgCAGATCATCATGGCTTGGATAATCACGAAGGAGTATCTCCACTCTACATCAGTTTCTTCTCTTTCATTGTTGTCGGTCTCTTCATAATGACTGCAGCAGTGATTGTGACCACCATTAAGAACAAAGTTAAAGATTCAACGAATACTGGAATAGATAATGACTACATTAATGCATAAGAAGACATCAGAGCTGCTGAAGAGAAAAGAACACGCAACCAATCAAGATTGATCAAATGATCTTCTGCATGCTAAACCGTAATACtcttaaaatcataaaatgatttttttttttatttactccatgccatattttaattacaatgcaaataacattttagtatgCTGGTTTATTCTTGAAATCAGGTATTGCTTTctcctcatttgtgattttaatgaaattgagTGCAAagtaaatcaatacattttctaTGCAGAAAATATCTGTATGGCCTGTTGTGAAGTCATATTTCAATGATGTTTGTTGTcctttttattacaatatgaaTATTGTTCCTTATTCTCCAACTTAATGGAAGCAGGCATTATATCAGCCTTAAAGGTACCTCTTAAAATGAGAAGATtcaacagaaatgtttgttaGGGCtgcaagtttttttcttttgaatcaaAACATATGTTTTGATCCACCACACCTCCTTCGATGTGACTATTGCTGCCAATGCAAACGATCAACCACGCTACATTTCACGTTCTACTTTTCACAtccttttttgttgttcttgttAACACTGAGGAAGTCTGTTAAGCGTTAAGACTCAGTCATGTCACACCTCCCTACATACATCAGAAAGCTGTACTTTCTACTCTTTCATGGCATGAACcagctttttattcttttattggCCCTCTGGCCAGCTCTTAGTAAGTGGATTGCATTTCTTGCCtcatattgtgtttttgcaCTTTGTGTAATTACAGAAGTCAATAAAAATTTCATTTGTCTTGATTTTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89925 lncRNA upstream 2093 3824902 ~ 3826416 (+) True G60782
TU89876 lncRNA upstream 172577 3654761 ~ 3655932 (+) True G60743
XR_006251656.1 lncRNA upstream 220532 3607315 ~ 3607977 (+) True LOC122350949
XR_006251655.1 lncRNA upstream 220532 3607315 ~ 3607977 (+) False LOC122350949
TU89854 lncRNA upstream 248527 3579502 ~ 3579982 (+) True G60728
TU89958 lncRNA downstream 50728 3884882 ~ 3885873 (+) True G60803
TU90082 lncRNA downstream 73558 3907712 ~ 3908800 (+) True G60870
TU90154 lncRNA downstream 306455 4140609 ~ 4215206 (+) True G60895
TU90322 lncRNA downstream 467518 4301672 ~ 4342107 (+) True G61007
TU90378 lncRNA downstream 598844 4432998 ~ 4436499 (+) True G61048
XM_043247795.1 mRNA upstream 20662 3800278 ~ 3807847 (+) False LOC122350989
XM_043247794.1 mRNA upstream 20662 3800379 ~ 3807847 (+) False LOC122350989
XM_043247796.1 mRNA upstream 20662 3800728 ~ 3807847 (+) True LOC122350989
XM_043246378.1 mRNA upstream 63421 3743485 ~ 3765088 (+) True slc6a6a
XM_043247098.1 mRNA upstream 91405 3726570 ~ 3737104 (+) True abtb1
XM_043247426.1 mRNA downstream 1642 3835796 ~ 3845945 (+) True pcsk1nl
XM_043246329.1 mRNA downstream 90710 3924864 ~ 3931488 (+) True LOC122350109
XM_043247083.1 mRNA downstream 98636 3932790 ~ 3979201 (+) True fgd1
XM_043247084.1 mRNA downstream 116624 3950778 ~ 3979201 (+) False fgd1
XM_043247057.1 mRNA downstream 145625 3979779 ~ 3994876 (+) True tfe3a
TU89218 other upstream 1788673 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1792529 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1795446 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 1810989 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1910138 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 14460 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 90707 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 214465 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 1270416 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 1270416 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile